Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    28   0.73 
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    28   0.97 
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   1.7  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    26   3.9  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    25   5.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   5.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    25   6.8  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    25   9.0  

>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 210 HRHEGTEVVRGRYLHHGSAQQRTGGSRNF*TSTTTDKHER 329
           H+    EV+R   L H +A+ +  G  N   +T+T KH++
Sbjct: 273 HQDTQNEVLRDIVLEHPTAKAQDTGESNKDNNTSTSKHKK 312


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 145 EPGAVSTVWSADTGASHDPPHDIVMKGQKWFVADTFTTALLNNEQE 282
           +PGAV  V+  +   S+ P    + +G++W V  +F     NNE++
Sbjct: 150 KPGAVKRVFHFELDVSNYP----LPEGEEWMVGGSFGVMAPNNEED 191


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = -1

Query: 290  ATSSCSLLSRAVVKVSATNHFCPFMTMSCGGSCEAPVSADHTVLTAPGSSFTVRWNLNTV 111
            A   C  +  A+V   A     P  T S  GS +A +   H  L +  S   +  ++  V
Sbjct: 1239 ACRKCGDMENALVHFEAAAALAP--TKSGSGSQQALLIEPHYALLSNLSKAAIEGSVEIV 1296

Query: 110  S*SPALRRI*YPPR 69
                 LRRI +PP+
Sbjct: 1297 QILSYLRRIRHPPK 1310


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 289 RLPPVRC*AEPW*RYRP 239
           RLPP+ C AEP+ R +P
Sbjct: 65  RLPPINCLAEPFNRPQP 81


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = -3

Query: 453 DGFVQGVTDDSLHDAAILFTFADLSDLFSARILVCELAVSLCARAYLSSLTFRNCDFL 280
           D F+  V + SLHDA ++   A  ++L  A    CE+ +S   R Y  +++ +  +F+
Sbjct: 384 DQFIAEV-ERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFI 440


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 270 QRTGGSRNF*TSTTTDKHERTETPRAR 350
           +   GSRN  +ST + +H+ ++ PR+R
Sbjct: 815 KHASGSRNSISSTKSPQHKLSDQPRSR 841


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -1

Query: 299 SEIATSSCSLLSRAVVKVSATNHFCPFMTMSCGGSCEAPVSAD--HTVLTAPGSSFTVRW 126
           S   TSS S  SR     S ++      + S   S  APVS+   H   ++  SS +   
Sbjct: 380 SSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSH 439

Query: 125 NLNTVS*SPAL 93
           +L+++S  P L
Sbjct: 440 SLSSLSSKPIL 450


>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 18  PRWNVREDQEQGQEGIKPRRISDPA 92
           P    R+ +E G+EG K +R  DPA
Sbjct: 89  PAKRTRKRKEDGEEGGKRKRNQDPA 113


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 368 ENRSERSAKVKRIAASCKESSVTP 439
           E R +++ + KRIAAS +++S  P
Sbjct: 63  EQRRQQAMEAKRIAASTRQTSERP 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,833
Number of Sequences: 5004
Number of extensions: 34451
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)