Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306C12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0412 - 3177251-3177302,3177663-3177732,3177947-3178355 31 0.42
03_05_0470 - 24647118-24647267,24647387-24647528,24649070-24650256 29 1.7
11_06_0688 + 26291590-26292027,26292301-26292378,26292850-26292936 28 4.0
04_04_0188 - 23433753-23436572 28 4.0
02_01_0366 - 2631738-2632109 28 4.0
04_01_0061 + 617966-618025,618619-618780 28 5.2
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936... 27 6.9
01_01_0225 - 1911820-1912929,1913345-1913893,1914010-1914024 27 6.9
12_01_1047 + 10765856-10767784 27 9.1
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709... 27 9.1
11_06_0403 - 23150103-23150469,23150565-23150611 27 9.1
06_03_1312 - 29246828-29246899,29247011-29247058,29247138-292472... 27 9.1
03_03_0189 - 15287429-15287437,15288006-15288359 27 9.1
>03_01_0412 - 3177251-3177302,3177663-3177732,3177947-3178355
Length = 176
Score = 31.5 bits (68), Expect = 0.42
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 130 RTVKLEPGAVSTVWSADTGASHDPPHDIVMKGQKW 234
RTV++ PG V V A G HD D M+ KW
Sbjct: 68 RTVRIHPGVVRVVVQAGGGGVHDDGDDDDMELDKW 102
>03_05_0470 - 24647118-24647267,24647387-24647528,24649070-24650256
Length = 492
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -2
Query: 508 AESKDPKGRNMRHRVSSPG--WICPGRDRRLFT*CGNSLHLRGSLRSVLGADTCVRARGV 335
A+++ P+ RN RH + G + P ++ R + N+ L SLR GAD R V
Sbjct: 47 AKNRSPRARN-RHAAAGDGGGYGSPEQEGRGESSLPNAEALASSLRDCGGADGVRRVHAV 105
Query: 334 SVRS 323
+VRS
Sbjct: 106 AVRS 109
>11_06_0688 + 26291590-26292027,26292301-26292378,26292850-26292936
Length = 200
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 233 HFCPFMTMSCGGSCEAPVSADHTVLTAPGSSFTVRWNLN 117
+F PF+ +S GSC A V D+ V PGS+ + LN
Sbjct: 153 YFVPFVILSWDGSCLAVVQKDYKV---PGSARQLPIQLN 188
>04_04_0188 - 23433753-23436572
Length = 939
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 85 ILRKAGDQETVFKFHRTVKLEPGAVSTVWSADTGASH-DPPHDIVM 219
+L ++G E +KF +++ LEP +V VW A GA H++ M
Sbjct: 712 LLGRSGQTEEAYKFIKSMPLEPKSV--VWCALLGACRIHKNHELAM 755
>02_01_0366 - 2631738-2632109
Length = 123
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Frame = +1
Query: 73 GGYQILRKAGDQETVFKFHRTVKLEPGAVSTVW-------SADTGASHDPPHDIVM 219
GG R+ G+ V H ++L+P + TVW SA + A+ P + VM
Sbjct: 58 GGTSARREKGEVALVLSCHHRLRLDPMSPRTVWASSVAPLSASSSAASGPNEEAVM 113
>04_01_0061 + 617966-618025,618619-618780
Length = 73
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 462 LHPDGFVQGVTDDSLHDAAILFTFAD 385
+H DG V+GV D LH+A +L D
Sbjct: 35 VHVDGDVEGVHRDVLHEAELLVEIVD 60
>09_04_0037 +
13992103-13992624,13993001-13993180,13993423-13993691,
13994120-13995773
Length = 874
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +3
Query: 198 PAARHRHEGTEVVRGRYLHHGSAQQRTGGSRNF*TSTTTDKHERTETPR 344
PAA HRH G +R G T+TTT + T T R
Sbjct: 16 PAAAHRHRAERAAAGEPATRTHRTERAGEPAAATTTTTTRRPPPTTTER 64
>01_01_0225 - 1911820-1912929,1913345-1913893,1914010-1914024
Length = 557
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 94 KAGDQETVFKFHRTVKLEPGAVSTVWSADTGASHDP 201
+ GD F F T +L+PGA V + +DP
Sbjct: 344 RLGDDINAFMFRETARLDPGATLFVNDYNVEGGNDP 379
>12_01_1047 + 10765856-10767784
Length = 642
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 6 RRGLPRWNVREDQEQGQEGIKP 71
RRG+ RW VR + Q+G+KP
Sbjct: 371 RRGIWRWGVRLLDKMQQKGLKP 392
>12_01_0777 -
7095081-7096259,7096636-7096725,7096827-7096902,
7097150-7097367,7097502-7097717,7097922-7098107,
7098181-7098303,7098399-7098514,7099254-7099832,
7101485-7101517,7102485-7103679,7103732-7103797,
7104843-7104905,7105328-7105411
Length = 1407
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 224 PFMTMSCG-GSCEAPVSADHTVLTAPGSSFT 135
P + CG SC++ VS +V ++P +SFT
Sbjct: 193 PLVLSECGDSSCDSSVSEQSSVTSSPCTSFT 223
>11_06_0403 - 23150103-23150469,23150565-23150611
Length = 137
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 435 RPGQIHPGEDTRCLIFLPLGSFDSAL 512
RP QIH + R IFL +GS+ S L
Sbjct: 65 RPSQIHRVVNDRDAIFLGIGSYGSVL 90
>06_03_1312 -
29246828-29246899,29247011-29247058,29247138-29247215,
29247304-29247360,29247597-29247662,29247750-29247839,
29248136-29248213,29248318-29248422,29248534-29248669,
29248778-29248853,29248973-29249177,29249289-29249501,
29250073-29250795
Length = 648
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 220 KGQKWFVADTFTTALLNNEQEEVAISERQRRQISTSAQRHRELA 351
KG++ ++T TTA+L E+EEV + E++ + +R + A
Sbjct: 103 KGKRSSSSETRTTAVL-EEEEEVEVKEKKTEEDGEEGKRKEKAA 145
>03_03_0189 - 15287429-15287437,15288006-15288359
Length = 120
Score = 27.1 bits (57), Expect = 9.1
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Frame = +1
Query: 43 RNKGKKELSLGGYQILRKAGDQETVFKFHRTVKLEPGA-VSTVWSADTGASHDPP--HDI 213
R +G++ +L GY + KA + ++ V++ T+ +AD A H P H +
Sbjct: 8 RGRGERA-NLRGYVVAMKADFRAAHPLHNKEVQVSHVQHCETMVAADALAFHVQPKRHAV 66
Query: 214 VMKGQKWFVADTFTTALL----NNEQEEVAISERQRRQISTSAQRH 339
G K T+A N +V + RQRR+ +T+ RH
Sbjct: 67 ATDGDKQIQCKASTSAETLCPRRNLAVDVGCTRRQRRKSATTDSRH 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,707,812
Number of Sequences: 37544
Number of extensions: 279798
Number of successful extensions: 826
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -