Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306C12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44) 75 4e-14
SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 3e-09
SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034) 31 0.58
SB_8378| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26) 28 5.4
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1) 27 7.1
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_37913| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44)
Length = 788
Score = 74.9 bits (176), Expect = 4e-14
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Frame = +1
Query: 1 EVAEACPDGTFVKIRNKGKKELSLGGYQILRKAGDQE-TVFKFHRTVKLEPGAVSTVWSA 177
+ EA PDG ++KI N G+K+ +LGG+ I R+ G ++ +V+KF L+ + TVWSA
Sbjct: 648 QFTEADPDGKYIKIYNSGEKDEALGGWTIQRQVGTEDPSVYKFTPKYVLKSQSHVTVWSA 707
Query: 178 DTGASHDPPHDIVMKG-QKWFVADTFTTALLNNEQEEVA 291
G +H PP D+V K W + TAL+N EE+A
Sbjct: 708 QGGGTHKPPSDLVFKQLPSWGSGNEARTALVNAGGEEMA 746
>SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 58.4 bits (135), Expect = 3e-09
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Frame = +1
Query: 4 VAEACPDGTFVKIRN-KGKKELSLGGYQILRK-AGDQETVFKFHRTVKLEPGAVSTVWSA 177
+ E PDG +V++ N ++ +GGY I + AG TVF+F +L+ + +TVWSA
Sbjct: 487 ILEVNPDGNYVRLFNTSAHRDEEIGGYMIQQNVAGRPVTVFRFPPRTRLKALSHTTVWSA 546
Query: 178 DTGASHDPPHDIVMKGQ-KWFVADTFTTALLNNEQEEVA 291
+ + H+PP D + K Q KW TT L + +A
Sbjct: 547 GSLSRHNPPSDFLWKEQHKWGTGPECTTILCKPNGQAMA 585
>SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)
Length = 2245
Score = 31.1 bits (67), Expect = 0.58
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +1
Query: 7 AEACPDGTFVKIRNKGKKELSLGGYQILRKAGDQETVFKFHRTVKLEPGAVSTVWSADTG 186
A+ DG K +N K+ S Y + ++ ++H V PG + T+ G
Sbjct: 931 AQFIKDGLSGKDQNYTKERFSYSAYWKQAFVDPESSIHEYHMGVGTAPGLIDTMPFTSMG 990
Query: 187 AS-HDPPHDIVMKGQKWFVA 243
AS H P V K + F A
Sbjct: 991 ASTHGRPERYVNKNKITFSA 1010
>SB_8378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 204 ARHRHEGTEVVRGRYLHHGSAQQRTGGSRNF*TSTTTDKH---ERTETPRARTQ 356
++H H GT R RY HG+ R+ N T T T +H T T R+R+Q
Sbjct: 128 SKHDH-GTVTARSRY-DHGTITARSRHCHNHGTVTITSQHCHDHGTVTARSRSQ 179
>SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)
Length = 671
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 212 MSCGGSCEAPVSADHTVLTAPGSSFTVRW 126
MSC CE +S DH V+ A + W
Sbjct: 72 MSCDDQCELSISTDHHVMNARKIIWIASW 100
>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
Length = 630
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +3
Query: 198 PAARHRHEGTEV---VRGRYLHHGSAQQRTGGSRNF*TSTTTDKHERTETPRARTQ 356
P+A+ R V RG + HHG+ Q+R N ++ D + PR +Q
Sbjct: 359 PSAKQRQRCNSVGNIARGGHHHHGNMQRRHPSVGNVSSNRNADHVANSSAPRGGSQ 414
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 212 MSCGGSCEAPVSADHTVLTAPGSSFTVRWNLNT 114
MS GG+ AP+S D T ++ + T+ +++T
Sbjct: 2238 MSTGGTIAAPISTDETTASSMSTDGTIASSMST 2270
>SB_37913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +1
Query: 130 RTVKLEPGAVSTVWSADTGASHDPPHDIVMKGQKWFVADTFTTALLN 270
R ++E ++ V++++ + D+V KG++ F+ADT + A L+
Sbjct: 59 RYAQIEKELLAIVFASEKFDPYIFGRDLVQKGKEMFLADTLSRAYLH 105
>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 496 DPKGRNMRHRVSSPGWICPGRDRRLFT*CGNSL 398
+PKGR + + +P CP RRL T G+ L
Sbjct: 918 EPKGRKAQKQTLAPDSPCPSAARRLKTPLGSLL 950
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 173 DHTVLTAPGSSFTVRWNLNTVS 108
DH + TA G+ V WNLN ++
Sbjct: 256 DHILATAAGNGAVVIWNLNKIT 277
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,257,983
Number of Sequences: 59808
Number of extensions: 300266
Number of successful extensions: 874
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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