Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306C12f
(521 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X16275-1|CAA34351.1| 621|Drosophila melanogaster lamin protein. 117 1e-26
X07278-1|CAA30259.1| 622|Drosophila melanogaster protein ( Dros... 117 1e-26
BT001506-1|AAN71261.1| 622|Drosophila melanogaster LD38055p pro... 117 1e-26
AE014134-935|AAF52262.1| 622|Drosophila melanogaster CG6944-PA ... 117 1e-26
L07933-1|AAA28666.1| 621|Drosophila melanogaster lamin C like p... 113 1e-25
X75886-1|CAA53480.1| 621|Drosophila melanogaster nuclear lamin ... 113 1e-25
AY095046-1|AAM11374.1| 621|Drosophila melanogaster LD31805p pro... 113 1e-25
AE013599-1908|AAF58237.1| 621|Drosophila melanogaster CG10119-P... 113 1e-25
AE013599-2594|ABC66052.1| 394|Drosophila melanogaster CG33996-P... 29 5.1
AY128433-1|AAM75026.1| 453|Drosophila melanogaster HL05903p pro... 28 6.7
>X16275-1|CAA34351.1| 621|Drosophila melanogaster lamin protein.
Length = 621
Score = 117 bits (281), Expect = 1e-26
Identities = 57/116 (49%), Positives = 80/116 (68%), Gaps = 4/116 (3%)
Frame = +1
Query: 1 EVAEACPDGTFVKIRNKGKKELSLGGYQILRKAGDQ--ETVFKFHRTVKLEPGAVSTVWS 174
E+ E P+G FV++ NKG +E+++GG+Q+ R ++ T +KFHR+V++EP V TVWS
Sbjct: 473 EIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNGVITVWS 532
Query: 175 ADTGASHDPPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQIS--TSAQR 336
ADT ASH+PP +VMK QKW AD T LLN+E E VA +R +R +S TS+ R
Sbjct: 533 ADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVANLDRIKRIVSQHTSSSR 588
>X07278-1|CAA30259.1| 622|Drosophila melanogaster protein (
Drosophila mRNA fornuclear lamin Dm0. ).
Length = 622
Score = 117 bits (281), Expect = 1e-26
Identities = 57/116 (49%), Positives = 80/116 (68%), Gaps = 4/116 (3%)
Frame = +1
Query: 1 EVAEACPDGTFVKIRNKGKKELSLGGYQILRKAGDQ--ETVFKFHRTVKLEPGAVSTVWS 174
E+ E P+G FV++ NKG +E+++GG+Q+ R ++ T +KFHR+V++EP V TVWS
Sbjct: 474 EIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNGVITVWS 533
Query: 175 ADTGASHDPPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQIS--TSAQR 336
ADT ASH+PP +VMK QKW AD T LLN+E E VA +R +R +S TS+ R
Sbjct: 534 ADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVANLDRIKRIVSQHTSSSR 589
>BT001506-1|AAN71261.1| 622|Drosophila melanogaster LD38055p
protein.
Length = 622
Score = 117 bits (281), Expect = 1e-26
Identities = 57/116 (49%), Positives = 80/116 (68%), Gaps = 4/116 (3%)
Frame = +1
Query: 1 EVAEACPDGTFVKIRNKGKKELSLGGYQILRKAGDQ--ETVFKFHRTVKLEPGAVSTVWS 174
E+ E P+G FV++ NKG +E+++GG+Q+ R ++ T +KFHR+V++EP V TVWS
Sbjct: 474 EIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNGVITVWS 533
Query: 175 ADTGASHDPPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQIS--TSAQR 336
ADT ASH+PP +VMK QKW AD T LLN+E E VA +R +R +S TS+ R
Sbjct: 534 ADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVANLDRIKRIVSQHTSSSR 589
>AE014134-935|AAF52262.1| 622|Drosophila melanogaster CG6944-PA
protein.
Length = 622
Score = 117 bits (281), Expect = 1e-26
Identities = 57/116 (49%), Positives = 80/116 (68%), Gaps = 4/116 (3%)
Frame = +1
Query: 1 EVAEACPDGTFVKIRNKGKKELSLGGYQILRKAGDQ--ETVFKFHRTVKLEPGAVSTVWS 174
E+ E P+G FV++ NKG +E+++GG+Q+ R ++ T +KFHR+V++EP V TVWS
Sbjct: 474 EIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNGVITVWS 533
Query: 175 ADTGASHDPPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQIS--TSAQR 336
ADT ASH+PP +VMK QKW AD T LLN+E E VA +R +R +S TS+ R
Sbjct: 534 ADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVANLDRIKRIVSQHTSSSR 589
>L07933-1|AAA28666.1| 621|Drosophila melanogaster lamin C like
protein protein.
Length = 621
Score = 113 bits (273), Expect = 1e-25
Identities = 52/114 (45%), Positives = 78/114 (68%)
Frame = +1
Query: 1 EVAEACPDGTFVKIRNKGKKELSLGGYQILRKAGDQETVFKFHRTVKLEPGAVSTVWSAD 180
E+ EA +G F+K+ NKG +E++L G+Q+ R AGD+E FKF R K+ GA T+WS D
Sbjct: 481 EIIEADVEGRFIKLHNKGTEEINLTGWQLTRIAGDEELAFKFSRGSKILGGASVTIWSVD 540
Query: 181 TGASHDPPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQISTSAQRHR 342
G +HDPP+++VMK +KW VA++ + L N ++E+VA +R R +S+ RHR
Sbjct: 541 AGTAHDPPNNLVMK-KKWPVANSMRSVLANADKEDVASYDRVRANVSSHTSRHR 593
>X75886-1|CAA53480.1| 621|Drosophila melanogaster nuclear lamin C
protein protein.
Length = 621
Score = 113 bits (272), Expect = 1e-25
Identities = 52/114 (45%), Positives = 78/114 (68%)
Frame = +1
Query: 1 EVAEACPDGTFVKIRNKGKKELSLGGYQILRKAGDQETVFKFHRTVKLEPGAVSTVWSAD 180
E+ EA +G F+K+ NKG +E++L G+Q+ R AGD+E FKF R K+ GA T+WS D
Sbjct: 481 EIIEADVEGRFIKLHNKGTEEINLTGWQLTRIAGDEELAFKFSRGSKVLGGASVTIWSVD 540
Query: 181 TGASHDPPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQISTSAQRHR 342
G +HDPP+++VMK +KW VA++ + L N ++E+VA +R R +S+ RHR
Sbjct: 541 AGTAHDPPNNLVMK-KKWPVANSMRSVLANADKEDVASYDRVRANVSSHTSRHR 593
>AY095046-1|AAM11374.1| 621|Drosophila melanogaster LD31805p
protein.
Length = 621
Score = 113 bits (272), Expect = 1e-25
Identities = 52/114 (45%), Positives = 78/114 (68%)
Frame = +1
Query: 1 EVAEACPDGTFVKIRNKGKKELSLGGYQILRKAGDQETVFKFHRTVKLEPGAVSTVWSAD 180
E+ EA +G F+K+ NKG +E++L G+Q+ R AGD+E FKF R K+ GA T+WS D
Sbjct: 481 EIIEADVEGRFIKLHNKGTEEINLTGWQLTRIAGDEELAFKFSRGSKVLGGASVTIWSVD 540
Query: 181 TGASHDPPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQISTSAQRHR 342
G +HDPP+++VMK +KW VA++ + L N ++E+VA +R R +S+ RHR
Sbjct: 541 AGTAHDPPNNLVMK-KKWPVANSMRSVLANADKEDVASYDRVRANVSSHTSRHR 593
>AE013599-1908|AAF58237.1| 621|Drosophila melanogaster CG10119-PA
protein.
Length = 621
Score = 113 bits (272), Expect = 1e-25
Identities = 52/114 (45%), Positives = 78/114 (68%)
Frame = +1
Query: 1 EVAEACPDGTFVKIRNKGKKELSLGGYQILRKAGDQETVFKFHRTVKLEPGAVSTVWSAD 180
E+ EA +G F+K+ NKG +E++L G+Q+ R AGD+E FKF R K+ GA T+WS D
Sbjct: 481 EIIEADVEGRFIKLHNKGTEEINLTGWQLTRIAGDEELAFKFSRGSKVLGGASVTIWSVD 540
Query: 181 TGASHDPPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQISTSAQRHR 342
G +HDPP+++VMK +KW VA++ + L N ++E+VA +R R +S+ RHR
Sbjct: 541 AGTAHDPPNNLVMK-KKWPVANSMRSVLANADKEDVASYDRVRANVSSHTSRHR 593
>AE013599-2594|ABC66052.1| 394|Drosophila melanogaster CG33996-PA
protein.
Length = 394
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 179 SADHTVLTAPGSSFTVRWNLNTVS*SPALRRI 84
SADHT +PG TV + T + P++R I
Sbjct: 12 SADHTASASPGGGKTVAATMTTPASEPSVRHI 43
>AY128433-1|AAM75026.1| 453|Drosophila melanogaster HL05903p
protein.
Length = 453
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 353 CASSRCLCALVLICRR*RSEIATSSCSLL 267
C +S C A+V CRR RS +S CS++
Sbjct: 10 CIASCCRLAIVESCRRVRSPHRSSMCSVM 38
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,592,320
Number of Sequences: 53049
Number of extensions: 449385
Number of successful extensions: 1411
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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