Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306C12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z96047-2|CAB09411.1| 566|Caenorhabditis elegans Hypothetical pr... 86 2e-17
X74027-1|CAA52188.1| 566|Caenorhabditis elegans lamin protein. 84 7e-17
U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate fi... 61 5e-10
U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate fi... 61 5e-10
X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic int... 34 0.054
X78553-1|CAA55296.1| 543|Caenorhabditis elegans cytoplasmic int... 31 0.66
U49831-2|AAK68314.1| 526|Caenorhabditis elegans Intermediate fi... 31 0.66
U49831-1|AAA93405.1| 543|Caenorhabditis elegans Intermediate fi... 31 0.66
U28734-1|AAB52603.2| 397|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF043693-7|AAB97540.1| 171|Caenorhabditis elegans Hypothetical ... 28 4.7
>Z96047-2|CAB09411.1| 566|Caenorhabditis elegans Hypothetical
protein DY3.2 protein.
Length = 566
Score = 85.8 bits (203), Expect = 2e-17
Identities = 39/96 (40%), Positives = 62/96 (64%)
Frame = +1
Query: 4 VAEACPDGTFVKIRNKGKKELSLGGYQILRKAGDQETVFKFHRTVKLEPGAVSTVWSADT 183
+ E +G +V++ N ++E S+GGY+++ KAG++E F+F +KL P A +TVWSAD
Sbjct: 449 IDEVDEEGKWVRVANNSEEEQSIGGYKLVVKAGNKEASFQFSSRMKLAPHASATVWSADA 508
Query: 184 GASHDPPHDIVMKGQKWFVADTFTTALLNNEQEEVA 291
GA H PP VMK Q+W + D + L ++E + V+
Sbjct: 509 GAVHHPPEVYVMKKQQWPIGDNPSARLEDSEGDTVS 544
>X74027-1|CAA52188.1| 566|Caenorhabditis elegans lamin protein.
Length = 566
Score = 83.8 bits (198), Expect = 7e-17
Identities = 38/96 (39%), Positives = 61/96 (63%)
Frame = +1
Query: 4 VAEACPDGTFVKIRNKGKKELSLGGYQILRKAGDQETVFKFHRTVKLEPGAVSTVWSADT 183
+ E +G +V++ N ++E S+GGY+++ KAG++E F+F +KL P +TVWSAD
Sbjct: 449 IDEVDEEGKWVRVANNSEEEQSIGGYKLVVKAGNKEASFQFSSRMKLAPHRSATVWSADA 508
Query: 184 GASHDPPHDIVMKGQKWFVADTFTTALLNNEQEEVA 291
GA H PP VMK Q+W + D + L ++E + V+
Sbjct: 509 GAVHHPPEVYVMKKQQWPIGDNPSARLEDSEGDTVS 544
>U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate
filament, b protein1, isoform a protein.
Length = 558
Score = 60.9 bits (141), Expect = 5e-10
Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Frame = +1
Query: 4 VAEACPDGTFVKIRNKGK-KELSLGGYQILRKA-GDQETVFKFHRTVKLEPGAVSTVWSA 177
++E P+G F+K+ N + K+ ++G ++I RK G +E V+ V ++PG T+++
Sbjct: 449 ISECDPNGKFIKLENSHRNKDENVGEHKIRRKLDGRREIVYSIPANVVIKPGKNLTIYAR 508
Query: 178 DTGASHDPPHDIVMKGQK-WFVADTFTTALLNNEQEEVA 291
D G ++PP +V G+ W + T+L+N + EE A
Sbjct: 509 DQGGINNPPESLVFDGENTWGIGANVVTSLVNKDGEERA 547
>U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate
filament, b protein1, isoform b protein.
Length = 589
Score = 60.9 bits (141), Expect = 5e-10
Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Frame = +1
Query: 4 VAEACPDGTFVKIRNKGK-KELSLGGYQILRKA-GDQETVFKFHRTVKLEPGAVSTVWSA 177
++E P+G F+K+ N + K+ ++G ++I RK G +E V+ V ++PG T+++
Sbjct: 480 ISECDPNGKFIKLENSHRNKDENVGEHKIRRKLDGRREIVYSIPANVVIKPGKNLTIYAR 539
Query: 178 DTGASHDPPHDIVMKGQK-WFVADTFTTALLNNEQEEVA 291
D G ++PP +V G+ W + T+L+N + EE A
Sbjct: 540 DQGGINNPPESLVFDGENTWGIGANVVTSLVNKDGEERA 578
>X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 534
Score = 34.3 bits (75), Expect = 0.054
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Frame = +1
Query: 4 VAEACPDGTFVKIRNKGK-KELSLGGYQILRKA-GDQETVFKFHRTVKLEPG--AVSTVW 171
++E P+G F+K+ N + K+ ++G ++I RK G +E V+ V ++PG ST
Sbjct: 449 ISECDPNGKFIKLENSHRNKDENVGEHKIRRKLDGRREIVYSIPANVVIKPGKNLTSTPV 508
Query: 172 SADTGASH 195
+ + +H
Sbjct: 509 TKEASTTH 516
>X78553-1|CAA55296.1| 543|Caenorhabditis elegans cytoplasmic
intermediate filamentprotein protein.
Length = 543
Score = 30.7 bits (66), Expect = 0.66
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Frame = +1
Query: 4 VAEACPDGTFVKIRN-KGKKELSLGGYQILRKA-GDQETVFKFHRTVKLEPGAVSTVWSA 177
+ E P G ++ + N G + ++I R G Q VF+ + ++ ++
Sbjct: 434 IVECDPQGKYIILENTSGSVAEDVSNFEIRRVIDGVQAFVFRLPSHLVIQQHGHLKIYGR 493
Query: 178 DTGASHDPPHDIVMKGQ-KWFVADTFTTALLNNEQEEVAISERQRRQISTSAQR 336
++G + PP IVM+ W T L N+ I +R Q + ++ R
Sbjct: 494 NSGGINSPPDSIVMESHPSWGQGGQVETFLYNSH----GIEKRSHIQTTVASSR 543
>U49831-2|AAK68314.1| 526|Caenorhabditis elegans Intermediate
filament, b protein2, isoform c protein.
Length = 526
Score = 30.7 bits (66), Expect = 0.66
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Frame = +1
Query: 4 VAEACPDGTFVKIRN-KGKKELSLGGYQILRKA-GDQETVFKFHRTVKLEPGAVSTVWSA 177
+ E P G ++ + N G + ++I R G Q VF+ + ++ ++
Sbjct: 417 IVECDPQGKYIILENTSGSVAEDVSNFEIRRVIDGVQAFVFRLPSHLVIQQHGHLKIYGR 476
Query: 178 DTGASHDPPHDIVMKGQ-KWFVADTFTTALLNNEQEEVA 291
++G + PP IVM+ W T L N+ E A
Sbjct: 477 NSGGINSPPDSIVMESHPSWGQGGQVETFLYNSHGIEKA 515
>U49831-1|AAA93405.1| 543|Caenorhabditis elegans Intermediate
filament, b protein2, isoform a protein.
Length = 543
Score = 30.7 bits (66), Expect = 0.66
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Frame = +1
Query: 4 VAEACPDGTFVKIRN-KGKKELSLGGYQILRKA-GDQETVFKFHRTVKLEPGAVSTVWSA 177
+ E P G ++ + N G + ++I R G Q VF+ + ++ ++
Sbjct: 434 IVECDPQGKYIILENTSGSVAEDVSNFEIRRVIDGVQAFVFRLPSHLVIQQHGHLKIYGR 493
Query: 178 DTGASHDPPHDIVMKGQ-KWFVADTFTTALLNNEQEEVA 291
++G + PP IVM+ W T L N+ E A
Sbjct: 494 NSGGINSPPDSIVMESHPSWGQGGQVETFLYNSHGIEKA 532
>U28734-1|AAB52603.2| 397|Caenorhabditis elegans Hypothetical
protein C53C9.2 protein.
Length = 397
Score = 27.9 bits (59), Expect = 4.7
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +3
Query: 12 GLPRWNVREDQEQG 53
G+PRWN+ +D++QG
Sbjct: 48 GMPRWNITKDKKQG 61
>AF043693-7|AAB97540.1| 171|Caenorhabditis elegans Hypothetical
protein C34B2.8 protein.
Length = 171
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +1
Query: 118 FKFHRTVKLEPGAVSTVWSADTGASHDPPHDIVMKGQKWFVADTFTTALLNNEQEEVAIS 297
F FHRT + TV +A GA+ + ++G+K + + F +NN E +
Sbjct: 20 FNFHRTFPKLVWSPGTVVAAIFGATAYGVY-AALEGKKKDITEKFEDVDINNAMEPFLTA 78
Query: 298 ERQR 309
ER R
Sbjct: 79 ERDR 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,612,153
Number of Sequences: 27780
Number of extensions: 211888
Number of successful extensions: 625
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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