Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    27   0.088
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.62 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   7.7  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 0.088
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 170 HTVLTAPGSSFTVRWNLNTVS*SPALRRI*YPPRLN 63
           +T LT  G SFTV+  +  ++ SP    + Y P L+
Sbjct: 240 YTKLTVAGESFTVKNGIYGIALSPVTNNLYYSPLLS 275


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 58  KELSLGGYQILRKAGDQETVFKFHR 132
           K L LG  Q+L  +G+ E   + HR
Sbjct: 238 KSLKLGTKQVLMASGELELTLRIHR 262


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 224 PFMTMSCGGSCEAPVSADH 168
           P +T +C GS   P+  DH
Sbjct: 186 PTVTSACVGSAYTPLKEDH 204


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 481 NMRHRVSSPGWICPGRDRRLF 419
           ++   + S GWIC  R R+++
Sbjct: 368 SIHDNICSNGWICEHRWRQIY 388


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 167 TVLTAPGSSFTVRWNLNTVS*SPALRRI*YPP 72
           T +T  G S+T +  ++ ++ SP    + Y P
Sbjct: 238 TKMTIDGESYTAQDGISGMALSPMTNNLYYSP 269


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 167 TVLTAPGSSFTVRWNLNTVS*SPALRRI*YPP 72
           T +T  G S+T +  ++ ++ SP    + Y P
Sbjct: 238 TKMTIDGESYTAQDGISGMALSPMTNNLYYSP 269


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 167 TVLTAPGSSFTVRWNLNTVS*SPALRRI*YPP 72
           T +T  G S+T +  ++ ++ SP    + Y P
Sbjct: 238 TKMTIDGESYTAQDGISGMALSPMTNNLYYSP 269


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 420 KSRRSRPGQIHPGEDTRCLIFLPLGSFDSALWA 518
           K  R    +IH   D+     L  G  D+++WA
Sbjct: 11  KKMRKATKEIHSISDSLVNAKLAFGFLDNSVWA 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,760
Number of Sequences: 438
Number of extensions: 2389
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)