Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67240.1 68418.m08475 exonuclease family protein contains exo...    29   2.5  
At4g33210.1 68417.m04728 F-box family protein (FBL15) contains s...    29   2.5  
At5g15300.1 68418.m01792 pentatricopeptide (PPR) repeat-containi...    28   4.4  
At3g26250.1 68416.m03275 DC1 domain-containing protein contains ...    28   4.4  
At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative...    27   5.8  
At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative...    27   5.8  
At2g24650.1 68415.m02944 transcriptional factor B3 family protei...    27   5.8  
At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,...    27   7.7  
At5g27970.1 68418.m03369 expressed protein                             27   7.7  
At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical t...    27   7.7  
At3g19800.1 68416.m02508 expressed protein                             27   7.7  

>At5g67240.1 68418.m08475 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 745

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 184 GASHDPPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQISTSAQRHRELAHKYP 363
           GA+H+  HD     +    A     A L    EE+ ++E++R++    A + +   HK P
Sbjct: 243 GAAHNCVHDAAAAMKLVLAAVEKGAATLIQPTEEMMVAEKRRQEARQEAGKAQLFLHKIP 302


>At4g33210.1 68417.m04728 F-box family protein (FBL15) contains
           similarity to F-box protein FBL2 GI:6063090 from [Homo
           sapiens]
          Length = 942

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 335 LCALVLICRR*RSEIATSSCSLLSRAVVKVSATNHFCPFMTMSCGGSCEA 186
           L  LVL C     E+  S C  LS +V K+ + +  CP +      +CE+
Sbjct: 549 LTTLVLQCHS-LQEVDLSDCESLSNSVCKIFSDDGGCPMLKSLILDNCES 597


>At5g15300.1 68418.m01792 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 548

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 85  ILRKAGDQETVFKFHRTVKLEPGAVSTVWSADTGA 189
           +L +AG  E  F F  ++K+EP A+  VW    GA
Sbjct: 425 MLGRAGQLEEAFMFVESMKIEPNAI--VWRTLLGA 457


>At3g26250.1 68416.m03275 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 490

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 354 VCELAVSLCARAYLSSLTFRNCDFLLFV 271
           +C    SLC   +    + RNCDF L V
Sbjct: 253 ICSACPSLCIAGFFYECSERNCDFRLHV 280


>At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative
           (UBP8) similar to ubiquitin-specific protease 8 partial
           sequence GI:11993469 [Arabidopsis thaliana]
          Length = 622

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 230 FCPFMTMSCGGSCEAPVSADHTVLTAPGSSFTVRWNLN 117
           F PFM +S    C +  + D TV++A GSS  +   +N
Sbjct: 198 FDPFMYLSLPLPCTSMRTMDLTVMSADGSSLPIPLTVN 235


>At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative
           (UBP8) similar to ubiquitin-specific protease 8 partial
           sequence GI:11993469 [Arabidopsis thaliana]
          Length = 622

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 230 FCPFMTMSCGGSCEAPVSADHTVLTAPGSSFTVRWNLN 117
           F PFM +S    C +  + D TV++A GSS  +   +N
Sbjct: 198 FDPFMYLSLPLPCTSMRTMDLTVMSADGSSLPIPLTVN 235


>At2g24650.1 68415.m02944 transcriptional factor B3 family protein low
            similarity to reproductive meristem gene 1 from [Brassica
            oleracea var. botrytis] GI:3170424, [Arabidopsis
            thaliana] GI:13604227; contains Pfam profile PF02362: B3
            DNA binding domain
          Length = 1440

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 247  TFTTALLNNEQEEVAISERQR-RQISTSAQRHRELAH 354
            T    LL+NE EE   SE      +ST  + H E +H
Sbjct: 1274 TLVLCLLSNEPEEEVCSEANEVESLSTDQESHEESSH 1310


>At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,
            putative similar to SP|Q03460 Glutamate synthase [NADH],
            chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT)
            {Medicago sativa}
          Length = 2208

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -2

Query: 409  GNSLHLRGSLRSVLGA-DTCVRARGVSVRSCLSVVVDVQKLRLPP-VRC*AEPW 254
            GN +  +G    V+G  DT     G S+R   + +V+++ L  PP  R    PW
Sbjct: 1981 GNYISAKGKKVVVIGGGDTGTDCIGTSIRHGCTNIVNLELLPQPPSTRAPGNPW 2034


>At5g27970.1 68418.m03369 expressed protein
          Length = 1629

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 465 YLHPDGFVQGVTDDSLHDAAILFTFADLSDLFSARILVCELAVSLCARAYLSSL 304
           YL    FV   T +  H+       AD  DL    +L+C   +S+CA+ +LS L
Sbjct: 318 YLFILNFVLLTTKEQAHEMCS----ADDYDLCKFSLLMCVHPISVCAQVFLSML 367


>At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical to
           alpha-glucosidase 1 [Arabidopsis thaliana] GI:2323344
          Length = 902

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 130 RTVKLEPGAVSTVWSADTGASHDPPHDIVMKGQKWFVAD 246
           R+ +L PG   T+W+AD G S +P  D+ + G   F  D
Sbjct: 203 RSFRLIPGETMTLWNADIG-SENP--DVNLYGSHPFYMD 238


>At3g19800.1 68416.m02508 expressed protein
          Length = 229

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 269 LSRAVVKVSATNHFCPFMTMSCGGSCEAPVSADHTVLTAPGSSFTVR 129
           L  + +KVS   H  PF ++S      +P+ A    +   GSS TV+
Sbjct: 11  LLNSKIKVSGNTHHLPFSSLSKKHQASSPIQA---AINGGGSSKTVK 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,137,574
Number of Sequences: 28952
Number of extensions: 201508
Number of successful extensions: 578
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)