Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   1.3  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    27   2.2  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   3.0  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   5.2  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   6.8  

>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 435 AGPIWQILVLNYLWKSRE 382
           +GPIWQ+   N  W+SRE
Sbjct: 917 SGPIWQLKKENNYWESRE 934


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 516 DVVKRRPVNCNTTHYRANWVPGPPSRRAGPIWQILVLNYL 397
           ++++  P    ++ Y   W  G PSR  G +W+  + N L
Sbjct: 194 EILRNWPDALKSSRYAGIWRQGIPSRVRGRVWEKAIGNNL 233


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 272 LKTNKRNPSDGGHIKRKTKLLFLLNSEH 355
           LK N R+PSD G   R  K++ +    H
Sbjct: 221 LKLNGRHPSDNGEKIRNKKVIIIQGGSH 248


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -3

Query: 495 VNCNTTHYRANWVPGPPSRRAGPIWQILVLNYLWK 391
           V C + H   NW+          IW+++    +WK
Sbjct: 382 VRCLSVHVSGNWLASGGDDGVLRIWEVMTGRCVWK 416


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +1

Query: 130 ITTSQPYSPASLGIKISSIIYC 195
           + T +PY P+++ +   +I+YC
Sbjct: 414 VLTQKPYDPSAVDVWSCAIVYC 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,936,766
Number of Sequences: 5004
Number of extensions: 37881
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)