Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z70205-8|CAO78730.1|  270|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z70205-7|CAA94120.2|  996|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AB054992-1|BAB62002.1|  996|Caenorhabditis elegans peroxin protein.    28   4.7  
AL132898-10|CAC14416.2|  346|Caenorhabditis elegans Hypothetical...    27   6.2  
AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF039042-5|AAC48246.1|  307|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 336  NNNFVFLLMCPPSDGFLLFVLSL 268
            N++F+ LL+CPPS  F  F+L L
Sbjct: 1644 NSDFIPLLVCPPSQEFYEFLLRL 1666


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 336  NNNFVFLLMCPPSDGFLLFVLSL 268
            N++F+ LL+CPPS  F  F+L L
Sbjct: 1644 NSDFIPLLVCPPSQEFYEFLLRL 1666


>Z70205-8|CAO78730.1|  270|Caenorhabditis elegans Hypothetical
           protein C11H1.4b protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 440 EELDRFGKFWS*IICGSPEKV*KVDKYENARNLIKITILFFF*CAPRRTDSF 285
           + L R G+F   + CG PEK  ++D  +   N +K T + F  C  ++TD +
Sbjct: 154 DALLRPGRFDHHVYCGHPEKTERLDIMKVLTNKLKPTDVDFE-CLAQKTDGW 204


>Z70205-7|CAA94120.2|  996|Caenorhabditis elegans Hypothetical protein
            C11H1.4a protein.
          Length = 996

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 440  EELDRFGKFWS*IICGSPEKV*KVDKYENARNLIKITILFFF*CAPRRTDSF 285
            + L R G+F   + CG PEK  ++D  +   N +K T + F  C  ++TD +
Sbjct: 880  DALLRPGRFDHHVYCGHPEKTERLDIMKVLTNKLKPTDVDFE-CLAQKTDGW 930


>AB054992-1|BAB62002.1|  996|Caenorhabditis elegans peroxin protein.
          Length = 996

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 440  EELDRFGKFWS*IICGSPEKV*KVDKYENARNLIKITILFFF*CAPRRTDSF 285
            + L R G+F   + CG PEK  ++D  +   N +K T + F  C  ++TD +
Sbjct: 880  DALLRPGRFDHHVYCGHPEKTERLDIMKVLTNKLKPTDVDFE-CLAQKTDGW 930


>AL132898-10|CAC14416.2|  346|Caenorhabditis elegans Hypothetical
           protein Y59A8B.21 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 342 NKNNNFVFLLMCPPSDGFLLFVLSLFYTK 256
           +K NN+ +L++   + G LL  +S FY K
Sbjct: 283 HKANNYGYLILSTTTSGILLAAISQFYLK 311


>AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical
           protein Y54G9A.10 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 230 SIDKYKT*TFV*NKLKTNKRNPSDGGHIKRKTKLLFLLNSE-HFH 361
           S+D ++  TF+  KLK  + N S   H+     L  +  +E HF+
Sbjct: 314 SVDSFRNHTFLCKKLKKKRENTSITPHVSTVKNLELMKETEIHFN 358


>AF039042-5|AAC48246.1|  307|Caenorhabditis elegans Hypothetical
           protein ZK697.3 protein.
          Length = 307

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 94  FWFNSW*LFCY*ITTSQPYSPASLGIKISSII 189
           FW  +     + IT+S+PYSP  LG   S I+
Sbjct: 246 FWLINLPQIAHSITSSEPYSPRLLGFLDSCIL 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,741,755
Number of Sequences: 27780
Number of extensions: 212542
Number of successful extensions: 491
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)