Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.27 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.27 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.8  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    21   5.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 355  FSYLSTF*TFSGLPQIIQDQNLPNRSSSSRGGARYPIRPI 474
            F Y  T  T S +  + + ++LP R  SSR   R  + PI
Sbjct: 1817 FIYHGTSSTSSDISPMSEQKSLPRRGRSSRSSLRTLLPPI 1856


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 355  FSYLSTF*TFSGLPQIIQDQNLPNRSSSSRGGARYPIRPI 474
            F Y  T  T S +  + + ++LP R  SSR   R  + PI
Sbjct: 1813 FIYHGTSSTSSDISPMSEQKSLPRRGRSSRSSLRTLLPPI 1852


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 507 KRRPVNCNTTHYRANWVPGP 448
           K++P +C+T  YR   V  P
Sbjct: 565 KKQPSDCDTLEYRNGEVTTP 584


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 281 NKRNPSDGGHIKRKTKLLFLLNSEHFHIY 367
           +KR P+    ++ K K    LNSE+F I+
Sbjct: 27  DKRAPTGHQEMQGKEKNSASLNSENFGIF 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,735
Number of Sequences: 438
Number of extensions: 2424
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)