Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C08f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   1.2  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   1.2  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   1.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.6  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   2.9  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   8.7  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 278 HCLHDT--EDLFASYESYLGNSM*IPQHYTN 192
           H  H T   D + +Y S + N+  +P HY+N
Sbjct: 11  HSQHGTYPSDNYYNYTSDIPNAQQMPPHYSN 41


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 278 HCLHDT--EDLFASYESYLGNSM*IPQHYTN 192
           H  H T   D + +Y S + N+  +P HY+N
Sbjct: 11  HSQHGTYPSDNYYNYTSDIPNAQQMPPHYSN 41


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 278 HCLHDT--EDLFASYESYLGNSM*IPQHYTN 192
           H  H T   D + +Y S + N+  +P HY+N
Sbjct: 11  HSQHGTYPSDNYYNYTSDIPNAQQMPPHYSN 41


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 8   RCQIGDLVKSRKHGSYARSW*GYLPVGAALPPQCP 112
           RC  G+ + S +  +  R      PVG ALPP  P
Sbjct: 97  RCPSGESMLSER-AALLRGVPTLSPVGVALPPTLP 130



 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 206 QHYTNL*GSETLLS 165
           QHYTN+   E ++S
Sbjct: 502 QHYTNIISQEQIIS 515


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 414 RLARYYKTKSVLPPNWK 464
           RL  Y  T+SVL  +WK
Sbjct: 159 RLRMYINTESVLDGDWK 175


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 98  PPQCPYLVEIDCR 136
           PP+CP + E  C+
Sbjct: 30  PPRCPPIYEPSCQ 42


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,772
Number of Sequences: 336
Number of extensions: 2473
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)