Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   244   6e-66
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    30   0.24 
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    28   0.97 
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   1.7  
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    27   1.7  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   3.0  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   5.2  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   9.0  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  244 bits (597), Expect = 6e-66
 Identities = 114/151 (75%), Positives = 129/151 (85%)
 Frame = +3

Query: 45  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 224
           MGRMH+ GKGI+ SALPY RS P W K  AD V EQI K  KKG++PSQIGV LRDSHG+
Sbjct: 1   MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60

Query: 225 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 404
            QVRF+TG+KI+RI+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ES
Sbjct: 61  PQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIES 120

Query: 405 RIHRLARYYKTKSVLPPNWKYESSTASALVA 497
           RIHRLARYY+    LPP WKYES+TASALVA
Sbjct: 121 RIHRLARYYRKVGALPPTWKYESATASALVA 151


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = +3

Query: 231 VRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRI 410
           +R    KK+   +KA G      EDL +L    +   +  +  +++K    RL ++  RI
Sbjct: 623 IRINEAKKLAEELKAKGGLEVNAEDLEHLDADKLRAMQIEQVEKQNKSMNERLRVIGKRI 682

Query: 411 HRLARYYKTKSVLPPNWKYES 473
             L R Y+ +++  P W+ ++
Sbjct: 683 DHLERAYRREAI--PLWEEDA 701


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 342 KHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 443
           K+  R +K+ D ++  +LVESR+H L R+  +K+
Sbjct: 32  KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +3

Query: 249 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 428
           KKI+ I     L      D YYL KKA  + +    N  +K+SK   I +E +  +    
Sbjct: 183 KKIIDIFDQFPLLTKKYWD-YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSP 241

Query: 429 YKTKSVLPPNW 461
              +  L  +W
Sbjct: 242 VNLEKYLTKSW 252


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +3

Query: 129 TADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL--PE 302
           ++DD   Q  +     L   QIG+ L D  G A V   T     +      L  D+  PE
Sbjct: 66  SSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACT----WQFNFTFNLQDDMYAPE 121

Query: 303 DLYYLIKKAVAMRKHLE 353
            +  L K  +  +KH E
Sbjct: 122 SIELLTKSGIDFKKHQE 138


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = -1

Query: 176 TLLSKFVNLFLYIVGSQFQPGRDTAAVRQRRLGDTLTRSVHTTHVCGFLLNR 21
           TL+SK    FL+    Q Q      AV QR   D L  SV +  V   +LNR
Sbjct: 145 TLVSKVHPNFLFDSDVQSQHITRDEAVNQRLQDDPLVSSVGSLQVFSDMLNR 196


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 246 GKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 371
           G+ + ++  A  +    PE+L+  +KK+ + +K   +  K K
Sbjct: 192 GRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 77  LPVGAALPPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFT 217
           +P G   PP  P ++    R+      Q W+    S++NW N +G+T
Sbjct: 222 VPRGPPSPP--PPVLHSPPRKVSAQEQQDWQIPP-SISNWKNPKGYT 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,013
Number of Sequences: 5004
Number of extensions: 40487
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)