Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)        212   1e-55
SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_38153| Best HMM Match : DUF590 (HMM E-Value=2.7e-11)                28   5.4  
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)              28   5.4  
SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)              27   7.1  
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)                 27   9.4  
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_43376| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)               27   9.4  

>SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)
          Length = 135

 Score =  212 bits (518), Expect = 1e-55
 Identities = 98/116 (84%), Positives = 109/116 (93%)
 Frame = +3

Query: 117 WLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL 296
           W KLT+DDVKEQ+YKL KKGLTPSQIGV+LRDS+GVAQVR++TG KILRI+KA GLAP L
Sbjct: 20  WQKLTSDDVKEQMYKLAKKGLTPSQIGVILRDSYGVAQVRYITGNKILRILKAKGLAPSL 79

Query: 297 PEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 464
           PEDLY LIKKAVA+RKHLE+NRKDKDSKFRLIL+ESRIHRLARY+KTK VLPPNWK
Sbjct: 80  PEDLYCLIKKAVAVRKHLEKNRKDKDSKFRLILIESRIHRLARYFKTKRVLPPNWK 135


>SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 198 VMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 326
           V L D HG + +   + + + RI++AM      PED   L KK
Sbjct: 211 VTLVDDHGYSAMDVTSSQSVRRILRAMPGLFQKPEDQLQLTKK 253


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 281 THCLHDTEDLFASYESYLGNSM*IPQHYTNL*G-SETLLSKFVNLF 147
           T+    T  L A+Y +    +  +P +YTNL   + T L+ + NLF
Sbjct: 160 TNLFAPTHSLLANYTNLFAPTHSLPANYTNLFAPTHTTLANYTNLF 205


>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 75  ISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVM--LRDSHGVAQVRFVTG 248
           +S   LP +RS+  + +L +D    ++    K       + V+  + D  G A    + G
Sbjct: 745 LSHDDLPAQRSLGVYWELRSDSFAYRVSPPDKPFTRRGVLSVVNSVYDPLGHAAPVMLQG 804

Query: 249 KKILRIMKAMGLAPD 293
           KKIL+ + AMG  P+
Sbjct: 805 KKILQRLVAMGKKPE 819


>SB_38153| Best HMM Match : DUF590 (HMM E-Value=2.7e-11)
          Length = 733

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 265 IRRIFLPVTNLTWATPCESLSITPI 191
           +RRI LP+TN  + T  E+L +T +
Sbjct: 683 VRRIILPLTNRIYLTGSEALKVTQL 707


>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
          Length = 763

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 159 KLGKKGLTPSQIGVMLRD 212
           KL K+GL+PSQI V+ RD
Sbjct: 465 KLNKEGLSPSQIYVLARD 482


>SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)
          Length = 845

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 5   CRCQIGDLVKSRKHGSYARSW*GYLP 82
           CR +IG + KS KHGSY+ S  G+ P
Sbjct: 77  CRSRIG-IQKSTKHGSYSLSIPGHDP 101


>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
          Length = 961

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 288 PDLPEDLYYL-IKKAVAMRKHLE-RNRKDKDSKFRLILVESRIHRLARYY 431
           PD+P+D YYL +  +++M   L     KD   K   +L++     L  Y+
Sbjct: 146 PDIPDDNYYLSLSTSISMASVLSGSEEKDNFLKLCRLLIDGGTKSLLTYF 195


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +3

Query: 339  RKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA*VLINNL 518
            RK LER+  +   K + +  E      AR           +KYE    +  V+  L+N L
Sbjct: 1966 RKQLERDMAELQGKLQSVTKEKSDIEHARLQTEIDTRSMRYKYEQEAEARRVSETLLNQL 2025

Query: 519  K 521
            K
Sbjct: 2026 K 2026


>SB_43376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +3

Query: 69  KGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRD-SHGVAQVRFVT 245
           +G S S    R S+PTWL+L    +  +  +         Q  V L+D +H  A +++  
Sbjct: 54  RGSSTSNAAPRTSLPTWLQLPGPVLLRRFVRANNNDPLVDQ--VELKDANHTYAHIQYAD 111

Query: 246 GKKILRIMKAMGLAPDLPED 305
           G++    +    LAP  P++
Sbjct: 112 GRE--STVSLRDLAPCPPQN 129


>SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)
          Length = 284

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 270 KAMGLAPDLPEDLYYLIKKAVAMRKHL---ERNRKDKDSKFRLILVESRIHRLARYYKTK 440
           +A G+APD P +L  LIK+ + + +     +  R+ K+   +    + R+  + R  +TK
Sbjct: 124 RASGIAPDEPSELDQLIKQIIELEETTVPEDSQRQAKEKANKAKAEDVRLTAMERLSQTK 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,779,885
Number of Sequences: 59808
Number of extensions: 323439
Number of successful extensions: 740
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)