Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) simi...   248   2e-66
At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A) AtRP...   247   3e-66
At3g07990.1 68416.m00976 serine carboxypeptidase S10 family prot...    31   0.62 
At1g65720.1 68414.m07459 expressed protein                             29   1.4  
At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containi...    28   4.4  
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein        28   4.4  
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ...    28   4.4  
At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ...    28   4.4  
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    27   5.8  
At1g42440.1 68414.m04894 expressed protein contains Pfam domain,...    27   5.8  
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    27   7.7  
At5g20300.1 68418.m02416 chloroplast outer membrane protein, put...    27   7.7  
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim...    27   7.7  
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi...    27   7.7  

>At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) similar
           to ribosomal protein S13;  PF00312 (View Sanger Pfam):
           ribosomal protein S15; identical to cDNA AtRPS13A mRNA
           for cytoplasmic ribosomal protein S13 GI:6521011
          Length = 151

 Score =  248 bits (607), Expect = 2e-66
 Identities = 118/151 (78%), Positives = 131/151 (86%)
 Frame = +3

Query: 45  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 224
           MGRMH+ GKGIS SALPY+RS P+WLK T+ DV E I K  KKGLTPSQIGV+LRDSHG+
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 225 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 404
            QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 405 RIHRLARYYKTKSVLPPNWKYESSTASALVA 497
           RIHRLARYYK    LPP WKYES+TAS LVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151


>At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A)
           AtRPS13A mRNA for cytoplasmic ribosomal protein S13,
           Arabidopsis thaliana,AB031739
          Length = 151

 Score =  247 bits (605), Expect = 3e-66
 Identities = 118/151 (78%), Positives = 130/151 (86%)
 Frame = +3

Query: 45  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 224
           MGRMH+ GKGIS SALPY+RS P+WLK T  DV E I K  KKGLTPSQIGV+LRDSHG+
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 225 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 404
            QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 405 RIHRLARYYKTKSVLPPNWKYESSTASALVA 497
           RIHRLARYYK    LPP WKYES+TAS LVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151


>At3g07990.1 68416.m00976 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase II (CP-MII)
           GB:CAA70815 [Hordeum vulgare]
          Length = 459

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 81  GRYPYQERAYDPCLRLFT 28
           GRYP+  RAYDPC   ++
Sbjct: 300 GRYPWMSRAYDPCTERYS 317


>At1g65720.1 68414.m07459 expressed protein
          Length = 180

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -2

Query: 253 FLPVTNLTWATPCESLSITPICEGVRPFFPSL*ICSFTSSAVNFNQVGTLRR 98
           FL +T +T A PC++  I+     + P  P+L    FTS+   F  V T+RR
Sbjct: 16  FLSITTITTARPCKTFLISSYSLSITPENPNL-ESDFTST--RFVTVFTIRR 64


>At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 723

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 24/88 (27%), Positives = 41/88 (46%)
 Frame = +3

Query: 225 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 404
           A VR    K+     K M  +  +P+   Y   +A+   K   +NRKDK +   L ++ S
Sbjct: 634 AFVRVRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKNRKDKTA--ILGIINS 691

Query: 405 RIHRLARYYKTKSVLPPNWKYESSTASA 488
           +  R+    KTK      WKY+++  ++
Sbjct: 692 KFGRVKA--KTKGKKDEFWKYKTNRTTS 717


>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
          Length = 510

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +2

Query: 131 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNW 247
           C  C  TN   W+ G       CNA G  W     + N+
Sbjct: 7   CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLVNY 45


>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1056

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 292 SGARPIAFMIRRIFLPVTNLTWATPCESLSITP 194
           +  R I +++RR+ LP+ N  +  PC  L+  P
Sbjct: 212 ASGRQITWLLRRLTLPIRNALFEEPCLFLNSHP 244


>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
           and genefinder
          Length = 315

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 125 IDCRRCKGTNLQTWKEGSHSLTNWCNAEG 211
           + C  C+ T    W+EG +     CNA G
Sbjct: 215 LKCTHCETTTTPQWREGPNGRKTLCNACG 243


>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +3

Query: 72  GISQSALPYRRSVPTWL-KLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 248
           GI+   + Y   +     K + DD+     +L K G  P  I           +  FV G
Sbjct: 188 GITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEG 247

Query: 249 KKILRIMKAMGLAPDL 296
            +I  +MK+  L+P++
Sbjct: 248 DRIWDLMKSKNLSPNI 263


>At1g42440.1 68414.m04894 expressed protein contains Pfam domain,
           PF04950: Protein of unknown function (DUF663)
          Length = 793

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
 Frame = +3

Query: 246 GKKILRIMKAMGLAPD--LPEDLYYLIKKAVAMRKHLERNRKDK---DSKFRLILVESRI 410
           G + L + +++GL     L  DL   +KK   M+K        +   D KF        +
Sbjct: 170 GSQCLSVFRSIGLPSTTVLIRDLPSDVKKKNEMKKMCASQLASEFPEDCKFYPADTRDEL 229

Query: 411 HRLARYYKTKSVLPPNWKYESSTASALVA*VLINN 515
           H+    +K + +  P+W+ + S   A  A +L+++
Sbjct: 230 HKFMWLFKAQRLTVPHWRSQRSYIVARKAGMLVDD 264


>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 146 GTNLQTWKEGSHSLTNWCNAE 208
           GTN ++ KE   SLT+W  AE
Sbjct: 70  GTNNESMKETGQSLTSWVEAE 90


>At5g20300.1 68418.m02416 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 793

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 245 SYESYLGNSM*IPQHYTNL*GSETLLSKFVNL 150
           +YESY+G  M + QHY +   S+T L   V L
Sbjct: 308 NYESYVGQRMDVVQHYIHQAVSDTKLENPVLL 339


>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
           similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
           [Methylovorus sp.]
          Length = 419

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 131 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPS 232
           C  C G  L   K+GS ++   CN +G    CP+
Sbjct: 232 CSTCYGRGLVAHKDGSDTICTNCNGKG-KLPCPT 264


>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|P46825 Kinesin light chain
           (KLC) {Loligo pealeii}; contains Pfam profile PF00515:
           TPR Domain
          Length = 1797

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +2

Query: 44  HGSYARSW*GYLPVGAALPPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWS 223
           +G  A +W   +P  AA  P     + ++  R  G      ++GS+ L  W N   F  S
Sbjct: 278 YGFRANTW--LIPPTAAQSPAAFPPLPVEDERWGGDGGGQGRDGSYDLVPWSNEFAFIAS 335

Query: 224 CPSK 235
            P K
Sbjct: 336 MPCK 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,951,724
Number of Sequences: 28952
Number of extensions: 216735
Number of successful extensions: 627
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)