Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     28   0.73 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   5.2  

>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 263 FFFQLPSFFRVHSLLKVLIVVISSKLLGATQYSHSTND 150
           +F  +PSF RVH     L+ ++S   LGA Q + +  D
Sbjct: 833 WFENIPSFTRVHDKKLSLVAILSVISLGAQQVAVAIQD 870


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +2

Query: 35   VASKQSKNFSNRFSSFGAYSIQTNKQIFPLYNISIDFNNHLYCVNTELHQAVLKKSPQLE 214
            + S +  N  N  SSF       N+ I PLY+  ++F      +N  + +  ++ S +  
Sbjct: 2793 LVSTEISNTPNIDSSFSTVYRSLNESIVPLYS-ELEFFMKSVVLNQYIFELAMRLSKESN 2851

Query: 215  LSIV 226
            +++V
Sbjct: 2852 IAVV 2855


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,771,937
Number of Sequences: 5004
Number of extensions: 29712
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)