Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1021| Best HMM Match : Sec2p (HMM E-Value=1.9)                      29   3.1  
SB_43198| Best HMM Match : KIX (HMM E-Value=1.4)                       27   7.1  

>SB_1021| Best HMM Match : Sec2p (HMM E-Value=1.9)
          Length = 451

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 14  PISLGDSVASKQSKNFSNRFSSFGAYSIQTNKQIFPLYN 130
           P+ LGD  AS+  K  +++ SSF    +   K+ FP Y+
Sbjct: 413 PVPLGDETASQPQKPRNDKHSSFDKLMVAL-KESFPAYS 450


>SB_43198| Best HMM Match : KIX (HMM E-Value=1.4)
          Length = 209

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = +2

Query: 53  KNFSNRFS-SFGAYSIQTNKQIFPLYNISIDFN----NHLYCVNTELHQAVLKKSPQLEL 217
           KN   RFS S   Y+I    +I P   +   +N    NHL  V+  LH+ V         
Sbjct: 50  KNAQKRFSTSVEEYTIGKMSKIMPSSEVQFQYNDQFDNHLVTVHEALHKNVYDTVDLKVK 109

Query: 218 SIVNVL*KMKVVEK 259
           +I     K+ +++K
Sbjct: 110 AITKQEEKLSIIKK 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,877,917
Number of Sequences: 59808
Number of extensions: 178454
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)