Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   5.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.7  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 38  ASKQSKNFSNRFSSFGAYSIQTNKQIFPLYNISIDFNNHLYCVNT 172
           + ++S+N + R  S     I  N  +   YN + ++NN+    NT
Sbjct: 63  SKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNNNYNT 107


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 167 NTELHQAVLKKSPQLELSIVNVL 235
           N +L+  +L   P LEL+  N+L
Sbjct: 245 NCKLNDILLTVRPHLELTFENIL 267


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 167 NTELHQAVLKKSPQLELSIVNVL 235
           N +L+  +L   P LEL+  N+L
Sbjct: 245 NCKLNDILLTVRPHLELTFENIL 267


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 173 ELHQAVLKKSPQ 208
           ELH+A L K+PQ
Sbjct: 553 ELHRASLSKTPQ 564


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,307
Number of Sequences: 438
Number of extensions: 1988
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)