Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    29   0.56 
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    27   1.7  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   5.2  
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni...    25   5.2  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    25   6.8  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   6.8  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   9.0  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   9.0  

>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +1

Query: 346 ITDPVTGKKVSK-EQYKEDIERQTELYGRLKSTFNYSKAP---PRGWQDGKKDFTSNQHT 513
           + DPVTG++VSK E  K + +R  EL    K     + AP   P+     ++D   +Q+ 
Sbjct: 17  VLDPVTGEQVSKTELKKREKQRARELAKAKKQAEKAASAPVAAPKSSSKKEEDLDPSQYF 76

Query: 514 QS 519
           ++
Sbjct: 77  EN 78


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -1

Query: 134 VGTHCPSKRNFLAASATFLDISWLFF**FVL---LYSCILKIFLN 9
           VG HCP  R  +A+ +  + + W+ F   V+    +SC L  F++
Sbjct: 62  VGLHCPFHRRGIASLSVCVALHWIAFSCSVMCHFAWSCALPCFVD 106


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 318 KRSRLSVWRYNRPCYRQ 368
           KR++L  W   +PCY Q
Sbjct: 90  KRNKLIAWMRKKPCYEQ 106


>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
           Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +1

Query: 259 DIVLIQALPEKLTKLITHEIKEVVYPFGDITDPVTGKKVSKEQYKE 396
           D +++   P+KL + +     + V+P  ++ +   G+K   E+ K+
Sbjct: 196 DQMVLMQFPDKLPRFMGDADVDPVWPSSEVKEEEAGEKTDVEEKKD 241


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 430 TFHTIQFVFLYLLYIA 383
           TFH I F FLYL  IA
Sbjct: 87  TFHRIPFQFLYLAVIA 102


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 314 SWVINFVSFSGNAWIRTMSPV--LHIFSESWQ**NSSFLKYIKRFSSNSNL 168
           SW+I F+   G+ ++   SPV  +H F E  Q      L  I  F  NS +
Sbjct: 251 SWLIGFIEAEGSFYLLQKSPVRIIHGF-EITQNYEQPLLAQISEFLFNSQI 300


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 237 RENMQNWRHSPDPSIT*EANKVNN 308
           RE++ +  HSP PS++   N +NN
Sbjct: 121 RESLNSLCHSPAPSVSSCGNALNN 144


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 86  SLMQPGSFSYLDNVYRLLNKMLQKLE*R 169
           SL+ PG+ SYL + Y +L   L  L  R
Sbjct: 40  SLIPPGALSYLLSTYDILRPWLMALRVR 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,314
Number of Sequences: 5004
Number of extensions: 40165
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)