Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453...    29   2.3  
01_06_1100 + 34530132-34530485,34530544-34530705                       29   2.3  
03_06_0052 - 31295839-31295883,31296312-31296380,31296458-312965...    29   3.0  
01_06_0096 - 26408159-26408911,26409012-26409440                       29   3.0  
07_01_0105 - 798883-798942,799118-799186,799282-799345,799434-79...    27   9.1  

>03_01_0617 +
           4532651-4532893,4534713-4534939,4535077-4535150,
           4535753-4535809,4535940-4536280,4536979-4537047,
           4537152-4537219,4537404-4539569,4540101-4540178,
           4540326-4540437,4540722-4540772,4540886-4540936
          Length = 1178

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/83 (24%), Positives = 40/83 (48%)
 Frame = +1

Query: 16  NIFKIQEYSKTNH*KNNQEMSRNVADAARKFLLLGQCVPTVKQNAAKIRVKRLELDENLL 195
           N+ +I + S  N  K   E +  ++ + RK ++L    P+VK  A  +    +E +   +
Sbjct: 129 NVQRILDESAKNLVKMRSEEAERLSKS-RKSIVLDPANPSVKSQAKSMAAAAVEGNMRRM 187

Query: 196 MYFRKEEFYYCHDSEKICKTGDI 264
            + +K+EFY  + +  I  T  +
Sbjct: 188 NWKQKKEFYKKNPAAVIAPTKSV 210


>01_06_1100 + 34530132-34530485,34530544-34530705
          Length = 171

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 367 KKVSKEQYKEDIERQTELYGRLKSTFNYSKAPPRGW 474
           KK + +Q   D+  Q EL+  LKST      P + W
Sbjct: 121 KKPTGQQEARDVTNQLELFNELKSTLFSMSLPVKKW 156


>03_06_0052 -
           31295839-31295883,31296312-31296380,31296458-31296521,
           31296598-31296680,31297243-31297308,31297426-31297516,
           31298090-31298247,31298432-31298476,31299189-31299318,
           31300685-31300935
          Length = 333

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 196 MYFRKEEFYYCHDS-EKICKTGDIVLIQALPEKLTK 300
           M FRKE F+Y HD+ +++ K   ++  +AL   L K
Sbjct: 225 MIFRKEPFFYGHDNHDQLVKIAKVLGTEALNAYLNK 260


>01_06_0096 - 26408159-26408911,26409012-26409440
          Length = 393

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 305 INFVSFSGNAWIRTMSPVLHIFSESW 228
           IN + F G A +RT+SP+ H    +W
Sbjct: 264 INDIRFRGKAIVRTLSPMSHFEGGAW 289


>07_01_0105 -
           798883-798942,799118-799186,799282-799345,799434-799516,
           799957-800022,800143-800233,800622-800779,801144-801338,
           801499-801628,803016-803168,803877-803962
          Length = 384

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 196 MYFRKEEFYYCHDS-EKICKTGDIVLIQALPEKLTK 300
           M FRKE F+Y HD+ +++ K   ++   +L   L K
Sbjct: 271 MIFRKEPFFYGHDNHDQLVKIAKVLGTDSLNSYLNK 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,252,268
Number of Sequences: 37544
Number of extensions: 217293
Number of successful extensions: 545
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)