Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         39   0.002
SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)          29   2.3  
SB_10883| Best HMM Match : ig (HMM E-Value=7.00649e-43)                29   2.3  
SB_28335| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)               28   5.4  
SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)                   28   5.4  
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_39405| Best HMM Match : Pyridoxal_deC (HMM E-Value=1.8e-06)         27   7.1  
SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_43946| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_49216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +1

Query: 178 LDENLLMYFRKEEFYYCHDSEKICKTGDIVLIQALPEKLTKLITHEIKEVVYPFGDITDP 357
           L   L  Y+ K + Y+ HD +  C  GD+V I+     L+K+    ++E+V     + D 
Sbjct: 3   LHPTLKKYWNKRKVYFAHDEDNKCTRGDVVRIKEC-RPLSKMKKFNVEEIVEKAQQVVDA 61

Query: 358 VTGK 369
            TG+
Sbjct: 62  DTGE 65


>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
          Length = 1515

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = +1

Query: 274 QALPEKLTKLITHEIKEVVYPFGDITDPVTGKKVSKEQYKEDIERQTELYGRLKSTFNYS 453
           +AL  KL  L+TH+IK   + F D    ++  K+ ++  + + E  + + G  K   N +
Sbjct: 737 RALSNKLKILVTHQIK--YFNFADCVIFLSRGKIGQDISQREDELNSAIIG--KRNDNDT 792

Query: 454 KAPPRGWQDGKKDF 495
           +      +D KKD+
Sbjct: 793 EGDSHAAKDDKKDY 806


>SB_10883| Best HMM Match : ig (HMM E-Value=7.00649e-43)
          Length = 1280

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 250 KTGDIVLIQALPEKLTKLITHEIKEVVYPFGDITDPVT-GKKVSKEQYK 393
           K+G  + I + PE +TKL+   +   V  + DIT P T   +V+  Q+K
Sbjct: 171 KSGSAMRITSKPEDITKLLQGTLNYNVSWYWDITPPATISVRVADIQFK 219



 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 250 KTGDIVLIQALPEKLTKLITHEIKEVVYPFGDITDPVT 363
           K+G  + I + PE +TK++   +   V  + DIT P T
Sbjct: 856 KSGSAIRITSKPEDITKVLRGTLNYNVSWYWDITPPAT 893


>SB_28335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +1

Query: 286 EKLTKLITH-EIKEVVYPFGDITDPVTGKKVSKEQYKEDIERQTELYGRLKSTFNYSK-- 456
           EK   LIT  EIK +V    D+T+       + E+ K  ++ + +    L+ST + S+  
Sbjct: 471 EKEVTLITKKEIKHLVRKLADVTEREEKLSKNLEELKAQLKHERDAAQDLRSTLDISRDA 530

Query: 457 APPRGWQDGKKDFTSNQHTQ 516
              R  Q G+ +    +H +
Sbjct: 531 EEQRQHQQGELEALKKEHQE 550


>SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1252

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 512 VCWLEVKSFLPSCQPLGGALL*LNVDFNLPYNSVCLSISS 393
           VCW         C+  GGA   LN+   +PY+   +S+S+
Sbjct: 130 VCWSLEGGATSPCRDTGGASHALNISHLVPYSEYNISLSA 169


>SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 949

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +1

Query: 64  NQEMSRNVADAARKFLLLGQCVPTVKQNAAKIRVKRLELDENLL 195
           NQEM   +     K L+      +VKQ AA   +K   L+ENLL
Sbjct: 153 NQEMVDQLGSEVPKLLVSPDTSDSVKQCAALCVLKLFRLNENLL 196


>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2463

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 343  DITDPVTGKKVSKEQYKEDI 402
            DITDP+T  KVSKE    D+
Sbjct: 1616 DITDPITKAKVSKEMATLDV 1635


>SB_39405| Best HMM Match : Pyridoxal_deC (HMM E-Value=1.8e-06)
          Length = 1297

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/88 (25%), Positives = 34/88 (38%)
 Frame = +1

Query: 163  VKRLELDENLLMYFRKEEFYYCHDSEKICKTGDIVLIQALPEKLTKLITHEIKEVVYPFG 342
            VK         MY    + +  H   K      +V + A+PE ++ LI     E+  PF 
Sbjct: 1186 VKEYPESSRYFMYGSAGKAFLMHIPTKQPDFLQLVELSAVPEGVSPLILQHGAEIEMPFS 1245

Query: 343  DITDPVTGKKVSKEQYKEDIERQTELYG 426
              T   +GK +     K   E + E+ G
Sbjct: 1246 G-TPQTSGKAIVDPLDKSQYEVRVEIEG 1272


>SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 937

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/62 (22%), Positives = 33/62 (53%)
 Frame = +1

Query: 145 NAAKIRVKRLELDENLLMYFRKEEFYYCHDSEKICKTGDIVLIQALPEKLTKLITHEIKE 324
           +A +I+ +  E  EN++   RK+E   C + + +    +     A+  + T+ + H+I+E
Sbjct: 126 DAMRIKTQIHETAENIVELVRKQEKSLCKEVDDVIGIEEDSHAAAVLIRRTERLLHDIQE 185

Query: 325 VV 330
           ++
Sbjct: 186 II 187


>SB_43946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +1

Query: 313 EIKEVVYPFGDITDPVTGKKVSKEQYKEDIERQTELYGRLKSTFNYSKAPPRGWQDGKK 489
           E +   Y + DI +          Q K+D  RQ +   + +S +N++   PRG + G++
Sbjct: 18  ETQSEEYLYDDINNVEEAPMEPPAQEKKDSYRQRKPKSKPQSYYNHNYHKPRGVRSGRR 76


>SB_49216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 773

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 136 VKQNAAKIRVKRLELDENLLMYFRKEEFY-YCHDSEKICKTGDIVLIQALPEKLT 297
           V++ A+++R +R  +  +++    +E+    C    ++C  G + L+QA   K+T
Sbjct: 708 VEREASELRHRRRSVAASIVKDLIQEQLQGTCAKRSRVCLGGKLALVQAFSGKIT 762


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,514,028
Number of Sequences: 59808
Number of extensions: 265768
Number of successful extensions: 702
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)