Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07930.3 68416.m00970 HhH-GPD base excision DNA repair family...    31   0.62 
At3g07930.2 68416.m00969 HhH-GPD base excision DNA repair family...    31   0.62 
At3g07930.1 68416.m00968 HhH-GPD base excision DNA repair family...    31   0.62 
At1g05900.2 68414.m00619 endonuclease-related similar to endonuc...    30   0.82 
At1g05900.1 68414.m00618 endonuclease-related similar to endonuc...    30   0.82 
At3g17420.1 68416.m02225 protein kinase family protein contains ...    29   1.9  
At4g29140.1 68417.m04170 MATE efflux protein-related several hyp...    29   2.5  
At4g02300.1 68417.m00311 pectinesterase family protein contains ...    28   4.4  
At5g51420.1 68418.m06375 long-chain-alcohol O-fatty-acyltransfer...    27   5.8  
At1g16570.1 68414.m01986 glycosyl transferase family 1 protein c...    27   7.7  

>At3g07930.3 68416.m00970 HhH-GPD base excision DNA repair family
           protein
          Length = 445

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 18  YFQNTGIQQNESLKKQPRNVKKCR*CSQEVSL 113
           YF   GIQ NES K++ RNV+K    S  +SL
Sbjct: 259 YFHADGIQVNESQKEKSRNVRKTPIVSPVLSL 290


>At3g07930.2 68416.m00969 HhH-GPD base excision DNA repair family
           protein
          Length = 358

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 18  YFQNTGIQQNESLKKQPRNVKKCR*CSQEVSL 113
           YF   GIQ NES K++ RNV+K    S  +SL
Sbjct: 259 YFHADGIQVNESQKEKSRNVRKTPIVSPVLSL 290


>At3g07930.1 68416.m00968 HhH-GPD base excision DNA repair family
           protein
          Length = 352

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 18  YFQNTGIQQNESLKKQPRNVKKCR*CSQEVSL 113
           YF   GIQ NES K++ RNV+K    S  +SL
Sbjct: 259 YFHADGIQVNESQKEKSRNVRKTPIVSPVLSL 290


>At1g05900.2 68414.m00619 endonuclease-related similar to
           endonuclease III [Homo sapiens] GI:1753174; contains
           Pfam profile PF00633: Helix-hairpin-helix motif
          Length = 386

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +1

Query: 283 PEKLTKLITHEIKEVVYPFGDITDPVTG-KKVSK---EQYKEDIERQTE 417
           PE + K     IKE++YP G  T   T  KKV+K    +Y  DI R  E
Sbjct: 213 PEAIDKADESTIKELIYPVGFYTRKATNVKKVAKICLMEYDGDIPRTLE 261


>At1g05900.1 68414.m00618 endonuclease-related similar to
           endonuclease III [Homo sapiens] GI:1753174; contains
           Pfam profile PF00633: Helix-hairpin-helix motif
          Length = 314

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +1

Query: 283 PEKLTKLITHEIKEVVYPFGDITDPVTG-KKVSK---EQYKEDIERQTE 417
           PE + K     IKE++YP G  T   T  KKV+K    +Y  DI R  E
Sbjct: 213 PEAIDKADESTIKELIYPVGFYTRKATNVKKVAKICLMEYDGDIPRTLE 261


>At3g17420.1 68416.m02225 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 467

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 280 LPEKLTKLITHEIKEVVYPFGDITDPVTGKKVSKEQYKEDIERQTELYGRL-KSTFNYSK 456
           LP   +   T EIKE+    G   +  T  +   E++ EDIE   +  G L K     S 
Sbjct: 54  LPVTQSPRFTEEIKEISVDHGSSNNNGTSYQTLDEKFVEDIENGDKFSGSLEKKPLVGSH 113

Query: 457 APP 465
            PP
Sbjct: 114 LPP 116


>At4g29140.1 68417.m04170 MATE efflux protein-related several
           hypothetical proteins - Arabidopsis thaliana; contains
           Pfam profile PF01554: Uncharacterized membrane protein
           family
          Length = 532

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 223 YCHDSEKICKTGDIVLIQALPEKLTKLITHEIKEVVYPFGDITDPVT 363
           Y H    I K     LI +LP+ LT  + H I+  +   G I  PVT
Sbjct: 165 YLHQDPDIAKLAQTYLIFSLPDLLTNTLLHPIRIYLRAQG-IIHPVT 210


>At4g02300.1 68417.m00311 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 532

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 379 KEQYKEDIERQTELYGR--LKSTFNYSKAPPRGWQDGKKDF 495
           KE +K  + R    Y R  +  +F      P GW +GKKDF
Sbjct: 429 KENFKAYLGRPWRKYSRTVIIKSFIDDLIHPAGWLEGKKDF 469


>At5g51420.1 68418.m06375 long-chain-alcohol O-fatty-acyltransferase
           family protein / wax synthase family protein contains
           similarity to wax synthase  wax synthase - Simmondsia
           chinensis, PID:g5020219  similar to wax synthase
           [gi:5020219] from Simmondsia chinensis
          Length = 435

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 386 CSLETFLPVTGSVISPNG*TTSFISWVINF--VSFSGN 279
           C+L   LP+  + +  +G T  FISW+ NF  + FS N
Sbjct: 43  CALFRVLPLFFASVHLSGYTALFISWLANFKLILFSFN 80


>At1g16570.1 68414.m01986 glycosyl transferase family 1 protein
           contains similarity to mannosyltransferase GI:1800223
           from Dictyostelium discoideum; contains Pfam glycosyl
           transferase, group 1 family protein domain PF00534
          Length = 465

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 307 THEIKEVVYPFGDITDPVTGKKVSKEQYKEDIER 408
           T EI E  + + ++   +TGK   KE Y+E I+R
Sbjct: 295 TAEISEEQHHYPNLLFIITGKGPEKEMYEEKIKR 328


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,353,225
Number of Sequences: 28952
Number of extensions: 194980
Number of successful extensions: 575
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)