Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    29   0.56 
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   0.73 
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   1.3  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   1.3  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           27   1.7  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    25   5.2  
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.2  
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo...    25   9.0  
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    25   9.0  

>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 96  NFDHDKHIFTGHGGKQRTKKEASEH--TNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 263
           N + D +    H  K    ++ S H   +HFDPS + +K+V+      + K +S  KH
Sbjct: 18  NEEDDDYYSNAHSEKS---EDHSNHIKVSHFDPSSYKQKLVSVRETQRNRKFSSLQKH 72


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 120 FTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 239
           ++GH         ++   NHF+ +GH    +T  +N+ +N
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSPNN 281


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 512 YVQNIPTYCLAHLWRCPVLNRSLCEWA 432
           Y+QNIP       +RC  ++ ++C+W+
Sbjct: 466 YLQNIPIQKKYESYRCLFISGTICQWS 492


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 81  EYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS 200
           +YD++N DH  H    H     +  EA+         GHS
Sbjct: 21  DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHS 59


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 389 WNIQGVFYSHKISTSPTHRGCDLERDNATNEPSSKSV 499
           +N++GVF  + +       GC  ERD AT +   K +
Sbjct: 56  YNVEGVFMRNWLDEDSAPSGCPAERDWATVQKVCKKL 92


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +3

Query: 363 GWMLVSEID-GTSKAFFTHT 419
           GW    ++D GTSK  FTHT
Sbjct: 283 GWAHTRDLDAGTSKTSFTHT 302


>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 341 CGYPRSVRVDARLRDRWNIQGVFYSHKISTSPTHRGCDLERDNATNEPSSKSVYFGRN 514
           C    +++V+   R  W IQ + Y         HR  DL R+       SK++Y GR+
Sbjct: 10  CAMISTLKVNKIERGYWFIQCLRYCFIYIIKKQHRQADLPRNFGMR---SKALYIGRS 64


>SPAC1B3.07c |vps28||ESCRT I complex subunit
           Vps28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 454 IAASVSGRSRNFV*VKNALDVPSISETSIHP 362
           IA S++G  +NF+   +A+ +  I++  +HP
Sbjct: 153 IAKSIAGLVQNFITTLDAIRLNFIAKDQLHP 183


>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 218 THERRAQQEDFKHQTLDGLLINKQLWLAEGL-LSCQTKGGRYCGYPRSVRVDARLRD 385
           T  +RA  ++ +    +G++  K+  L +   +      GR CGY R +++  R  D
Sbjct: 53  TMAKRANPQNNRKGLAEGMVFEKETTLKKVFDVLVPRYNGRRCGYTRLLKLPPRSTD 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,363
Number of Sequences: 5004
Number of extensions: 42119
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)