Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726...    31   0.56 
02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839...    30   0.98 
03_02_0271 + 7029410-7029949,7030054-7030566                           29   3.0  
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834...    28   5.2  
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    28   5.2  
12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110     27   6.9  
10_06_0172 + 11473892-11474896                                         27   6.9  

>01_05_0344 +
           21172101-21172233,21172332-21172402,21172492-21172653,
           21172995-21173100,21174242-21174439,21174565-21174631,
           21174868-21175051,21175145-21175324,21175408-21175587,
           21176472-21176627,21177487-21178067,21178535-21178640,
           21179152-21179331,21179620-21179892
          Length = 858

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +2

Query: 209 RHETHERRAQQEDFKHQTLDGLLINKQLWLAE-GLLSCQTKGGRYCGYPRSVRVDARLRD 385
           R ET  + AQ   F  +    ++I KQ       L+ C   G RY GY    R +A    
Sbjct: 203 RKETMGKCAQLAQFDEELYKAIIIVKQSGNDTFSLIKCNFSGMRYAGYSTCFRKEAGSHG 262

Query: 386 RWNIQGVFYSHK 421
           R +  G+F  H+
Sbjct: 263 R-DTAGIFRVHQ 273


>02_04_0515 +
           23582105-23583519,23583613-23583741,23583835-23583970,
           23584051-23584139,23584236-23584347,23584427-23584533,
           23584630-23584723
          Length = 693

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 319 PNERRTLLRIPEECSGGCSSQRSMEHPRR 405
           P+E RT  R P E SGG  S+RS E P +
Sbjct: 76  PSEGRTEDREPGEVSGGSGSERSGERPMK 104


>03_02_0271 + 7029410-7029949,7030054-7030566
          Length = 350

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 185 SVRAFEKDRHETHERRAQQEDFKH-QTLDGLLINKQLWLAEGLLSCQTKG 331
           SV    K R E  E RA +E+           + ++LW   GLL+ QT G
Sbjct: 201 SVVEVRKKREEEEELRAMEEEKAGIDAAAAAQVRRELWCGLGLLAAQTLG 250


>12_02_0667 + 21682386-21682944,21683042-21683201,21683419-21683467,
            21683570-21683683,21683794-21684294,21684594-21684980,
            21685074-21685172,21685380-21685478,21685817-21685890,
            21686387-21687023
          Length = 892

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 110  QAHFHGPRW*AAHQERSV*THQPLRSVRAFEKDRHETHERRAQQEDFKHQTLDGLLINKQ 289
            + HF  P W    +  +V  HQ  R    F  D+  T E R   +DF H+T    + +K+
Sbjct: 832  RTHFARPSWRDVFKRVAV-NHQGQRVGVFFCGDQALTPELRRLAQDFSHKTTTKFVFHKE 890


>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 96  NFDHDKHIFTGHGGKQR--TKKEASEHTNH 179
           +FDH  H    HGG++R  +  EA  H +H
Sbjct: 275 HFDHHNHHHPIHGGRERGSSPAEADHHRHH 304


>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
          Length = 530

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 174 WCVQTLLSWCAAYHRG 127
           W ++ L  WCAA HRG
Sbjct: 192 WSLEQLNRWCAALHRG 207


>10_06_0172 + 11473892-11474896
          Length = 334

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 332 GRYCGYPRSVRVDARLRDRWNIQG 403
           G Y GYP +VRVDA     +N+ G
Sbjct: 288 GAYPGYPGAVRVDAATGAGYNVVG 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,030,241
Number of Sequences: 37544
Number of extensions: 281781
Number of successful extensions: 763
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)