BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS306C04f (521 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE014134-2140|AAF53151.1| 69|Drosophila melanogaster CG6770-PA... 118 4e-27 X04228-2|CAA27809.1| 96|Drosophila melanogaster protein ( Dros... 28 6.7 X04227-2|CAA27806.1| 96|Drosophila melanogaster URF 2 protein. 28 6.7 AY089684-1|AAL90422.1| 370|Drosophila melanogaster RH61266p pro... 28 8.8 AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed... 28 8.8 >AE014134-2140|AAF53151.1| 69|Drosophila melanogaster CG6770-PA protein. Length = 69 Score = 118 bits (285), Expect = 4e-27 Identities = 49/62 (79%), Positives = 56/62 (90%) Frame = +3 Query: 60 MSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 239 MSEA FDEY++YNFDHDKHIF+GH GKQR K+EA+EHTNHFDPSGHSRKI+TKLMN +N Sbjct: 1 MSEAHFDEYEHYNFDHDKHIFSGHSGKQRNKREANEHTNHFDPSGHSRKILTKLMNTNNN 60 Query: 240 KK 245 K Sbjct: 61 NK 62 >X04228-2|CAA27809.1| 96|Drosophila melanogaster protein ( Drosophila mRNA forCc gene from dopa decarboxylase gene cluster; mapping2.0 kb from the 5'end of Ddc gene. ). Length = 96 Score = 28.3 bits (60), Expect = 6.7 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +1 Query: 307 TIELPNERRTL-LRIPEECSGGCSSQRSMEHP 399 +I P RRT R+P S GCS S +HP Sbjct: 11 SIASPASRRTWSARVPTSSSHGCSGPSSSDHP 42 >X04227-2|CAA27806.1| 96|Drosophila melanogaster URF 2 protein. Length = 96 Score = 28.3 bits (60), Expect = 6.7 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +1 Query: 307 TIELPNERRTL-LRIPEECSGGCSSQRSMEHP 399 +I P RRT R+P S GCS S +HP Sbjct: 11 SIASPASRRTWSARVPTSSSHGCSGPSSSDHP 42 >AY089684-1|AAL90422.1| 370|Drosophila melanogaster RH61266p protein. Length = 370 Score = 27.9 bits (59), Expect = 8.8 Identities = 14/52 (26%), Positives = 25/52 (48%) Frame = +3 Query: 105 HDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 260 HD I GH G RT + H + + H ++ + + + +K T++TK Sbjct: 34 HDDPIQGGHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTK 85 >AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed DNA polymerase protein. Length = 826 Score = 27.9 bits (59), Expect = 8.8 Identities = 14/52 (26%), Positives = 25/52 (48%) Frame = +3 Query: 105 HDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 260 HD I GH G RT + H + + H ++ + + + +K T++TK Sbjct: 490 HDDPIQGGHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTK 541 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,707,840 Number of Sequences: 53049 Number of extensions: 496049 Number of successful extensions: 1440 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1344 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1439 length of database: 24,988,368 effective HSP length: 80 effective length of database: 20,744,448 effective search space used: 1929233664 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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