Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   189   2e-49
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   189   2e-49
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   1.7  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   6.8  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.0  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  189 bits (461), Expect = 2e-49
 Identities = 91/171 (53%), Positives = 113/171 (66%)
 Frame = +1

Query: 7   YFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEG 186
           YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ G
Sbjct: 12  YFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNG 71

Query: 187 DHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYN 366
           D+++  A+S ELPRYG+K GL N+ AAY+TG                             
Sbjct: 72  DYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFEL 131

Query: 367 VEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVSSXSIKRFP 519
            E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +   S  RFP
Sbjct: 132 TEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFI-PHSPNRFP 181


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  189 bits (461), Expect = 2e-49
 Identities = 91/171 (53%), Positives = 113/171 (66%)
 Frame = +1

Query: 7   YFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEG 186
           YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ G
Sbjct: 12  YFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNG 71

Query: 187 DHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYN 366
           D+++  A+S ELPRYG+K GL N+ AAY+TG                             
Sbjct: 72  DYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFEL 131

Query: 367 VEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVSSXSIKRFP 519
            E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +   S  RFP
Sbjct: 132 TEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFI-PHSPNRFP 181


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 304 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 212
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 497 EETLRPPSTAPFIAPKTRAPV 435
           EE +  P+T+P + PK + P+
Sbjct: 307 EEPVSEPTTSPILPPKNQEPI 327


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +1

Query: 142 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 264
           N+D      + +   D  VC +++  +  YG + G  +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 317  LTPYTLAQQMSQVMNTMLNL-STMDQEHLDVI 409
            +  YT+ Q+ S V N++LN+   M  + +D+I
Sbjct: 958  MAEYTIRQRYSHVDNSILNIEGDMSTDRIDLI 989


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,686
Number of Sequences: 5004
Number of extensions: 40454
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)