Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306C03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 190 8e-49
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 187 5e-48
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 30 0.98
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 28 5.2
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353... 27 6.9
02_04_0381 - 22497519-22497769,22498157-22498247 27 6.9
06_03_0957 + 26307062-26308987 27 9.1
03_02_0948 - 12645972-12646010,12646612-12646750,12646846-126470... 27 9.1
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 190 bits (462), Expect = 8e-49
Identities = 98/170 (57%), Positives = 114/170 (67%)
Frame = +1
Query: 7 YFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEG 186
YFKR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T Q+ Y+ I G
Sbjct: 13 YFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAG 69
Query: 187 DHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYN 366
D ++ AAYSHELPRYG++VGLTNYAAAY TG +Y
Sbjct: 70 DIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYY 129
Query: 367 VEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVSSXSIKRF 516
VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++ S KRF
Sbjct: 130 VEPADE-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDI-PHSDKRF 177
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 187 bits (455), Expect = 5e-48
Identities = 97/170 (57%), Positives = 113/170 (66%)
Frame = +1
Query: 7 YFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEG 186
Y KR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T Q+ Y+ I G
Sbjct: 13 YHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAG 69
Query: 187 DHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYN 366
D ++ AAYSHELPRYG++VGLTNYAAAY TG +Y
Sbjct: 70 DIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYY 129
Query: 367 VEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVSSXSIKRF 516
VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++ S KRF
Sbjct: 130 VEPADE-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDI-PHSDKRF 177
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 513 SFDGXRGNIEATVNSTLHSSKDTSTSS 433
S DG GN + T T++SS D STSS
Sbjct: 1961 SVDGGHGNAKQTETETIYSSVDDSTSS 1987
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 100 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 222
+YNT +YR + +S K V C+ + + E DH+ A S L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316
>03_03_0279 -
16134422-16134608,16134703-16134947,16135046-16135364,
16135451-16135675,16135780-16135946,16136030-16136146,
16136234-16136407,16136489-16136584,16136669-16136885,
16137005-16137123,16137249-16137441,16137562-16137713,
16137809-16137938,16138667-16138776
Length = 816
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 161 WHVTSLLERRTIRRYLGVLY 102
W S LERR RRYL +LY
Sbjct: 775 WKYVSNLERRETRRYLEMLY 794
>02_04_0381 - 22497519-22497769,22498157-22498247
Length = 113
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 231 WCEGWSDKLCCSIFNWSAISTKTASK 308
+C+G+ DK CC +WS K SK
Sbjct: 90 YCDGYDDKSCCD--DWSGDCHKCCSK 113
>06_03_0957 + 26307062-26308987
Length = 641
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 274 LNMLQHNLSDQPSHHNVATHVNKQRTQYGHLQSES 170
L +L L D+P HH V T +R Q H++ E+
Sbjct: 462 LGLLLSELCDEPWHHRVITF--SERPQLHHIKGET 494
>03_02_0948 -
12645972-12646010,12646612-12646750,12646846-12647090,
12647184-12647505,12647781-12648005,12648185-12648351,
12648428-12648544,12648989-12649162,12649372-12649467,
12649624-12649840,12650267-12650385,12650478-12650670,
12651212-12651363,12651485-12651611,12651731-12651828
Length = 809
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 161 WHVTSLLERRTIRRYLGVLYL 99
W S LERR RRYL + Y+
Sbjct: 771 WKYVSKLERRETRRYLEMFYI 791
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,686,790
Number of Sequences: 37544
Number of extensions: 271008
Number of successful extensions: 641
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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