Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306C03f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 145 2e-35
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 144 5e-35
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05) 29 1.8
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083) 29 1.8
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 27 7.1
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 27 7.1
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014) 27 7.1
SB_13736| Best HMM Match : PHD (HMM E-Value=0.001) 27 7.1
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 27 7.1
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24) 27 7.1
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0) 27 7.1
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 27 7.1
SB_57657| Best HMM Match : PHD (HMM E-Value=0.0012) 27 9.4
SB_40061| Best HMM Match : PHD (HMM E-Value=0.015) 27 9.4
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 27 9.4
SB_6963| Best HMM Match : PHD (HMM E-Value=0.054) 27 9.4
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 145 bits (351), Expect = 2e-35
Identities = 67/110 (60%), Positives = 78/110 (70%)
Frame = +1
Query: 163 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 342
+AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60
Query: 343 XXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNV 492
EYNVE +D PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +
Sbjct: 61 EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEI 110
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 144 bits (348), Expect = 5e-35
Identities = 89/198 (44%), Positives = 110/198 (55%), Gaps = 37/198 (18%)
Frame = +1
Query: 37 RRREGKTDYYARKR------------------------LVVQDKNKYNTP------KYRL 126
RR +GKTDYYARKR ++ Q++NK P KYR
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNKVGGPIFGSTQKYRR 76
Query: 127 IVRLS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXX 285
R NK ++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG
Sbjct: 77 NSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLL 136
Query: 286 XXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 465
EYNVE VD PGAFRC+LDVGLART+TGARVFGA+K
Sbjct: 137 LARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALK 196
Query: 466 GAVDGGLNVSSXSIKRFP 519
GAVDGGL + S+KRFP
Sbjct: 197 GAVDGGLEI-PHSMKRFP 213
>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
Length = 791
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 488 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 375
+RP PF+ P +RAP A PT+ P P S+
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393
>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
Length = 624
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 488 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 375
+RP PF+ P +RAP A PT+ P P S+
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 124 LIVRLSNKDVTCQVAYSRIEGD-HIVC 201
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 172 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 270
++ GDH+ A+YSH ++ R+ V + L AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 130 VRLSNKDVTCQVAYSRIEGDHIVCAAY 210
VRL ++D TC +YS I + +CA Y
Sbjct: 405 VRLVSRD-TCNASYSGIINERYICAGY 430
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 198 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 314
V+C + +C+ W CCSI N S + +S +W
Sbjct: 91 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 129
>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
Length = 598
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 198 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 314
V+C + +C+ W CCSI N S + +S +W
Sbjct: 104 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 142
>SB_13736| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 226
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 198 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 314
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 198 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 314
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 198 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 314
V+C + +C+ W CCSI N S + +S +W
Sbjct: 359 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 397
>SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24)
Length = 830
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 198 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 314
V+C + +C+ W CCSI N S + +S +W
Sbjct: 645 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 683
>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 198 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 314
V+C + +C+ W CCSI N S + +S +W
Sbjct: 184 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 222
>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 718
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 130 VRLSNKDVTCQVAYSRIEGDHIVCAAY 210
VRL ++D TC +YS I + +CA Y
Sbjct: 690 VRLVSRD-TCNASYSGIINERYICAGY 715
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 198 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 314
V+C + +C+ W CCSI N S + +S +W
Sbjct: 23 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 61
>SB_57657| Best HMM Match : PHD (HMM E-Value=0.0012)
Length = 363
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 198 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 314
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTNCCSISNESYNTLANSSCSW 98
>SB_40061| Best HMM Match : PHD (HMM E-Value=0.015)
Length = 260
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 198 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 314
V+C + +C+ W CCSI N S + +S +W
Sbjct: 104 VKCNQKGIQRDYCDAWYHTKCCSISNDSYNTLANSSCSW 142
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 497 EETLRPPSTAPFIAPKTRAPV 435
+ T+RPP T F+ T+APV
Sbjct: 1665 DTTMRPPKTDVFVTEATKAPV 1685
>SB_6963| Best HMM Match : PHD (HMM E-Value=0.054)
Length = 146
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 231 WCEGWSDKLCCSIFNWSAISTKTASKTW 314
+C+ W CCSI N S + +S +W
Sbjct: 115 YCDAWYHTKCCSISNESYNTLANSSCSW 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,971,112
Number of Sequences: 59808
Number of extensions: 338009
Number of successful extensions: 1072
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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