Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306C03f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 251 1e-66
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 251 1e-66
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 251 1e-66
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 251 1e-66
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 251 1e-66
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 251 1e-66
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 249 5e-66
BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein. 173 2e-43
AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5 pr... 161 2e-39
U76609-1|AAB18361.1| 145|Homo sapiens ribosomal L5 protein prot... 45 2e-04
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 251 bits (614), Expect = 1e-66
Identities = 117/173 (67%), Positives = 133/173 (76%)
Frame = +1
Query: 1 KQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRI 180
K YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RI
Sbjct: 10 KAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARI 69
Query: 181 EGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXE 360
EGD IVCAAY+HELP+YGVKVGLTNYAAAY TG E
Sbjct: 70 EGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDE 129
Query: 361 YNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVSSXSIKRFP 519
YNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++ S KRFP
Sbjct: 130 YNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSI-PHSTKRFP 181
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 251 bits (614), Expect = 1e-66
Identities = 117/173 (67%), Positives = 133/173 (76%)
Frame = +1
Query: 1 KQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRI 180
K YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RI
Sbjct: 10 KAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARI 69
Query: 181 EGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXE 360
EGD IVCAAY+HELP+YGVKVGLTNYAAAY TG E
Sbjct: 70 EGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDE 129
Query: 361 YNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVSSXSIKRFP 519
YNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++ S KRFP
Sbjct: 130 YNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSI-PHSTKRFP 181
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 251 bits (614), Expect = 1e-66
Identities = 117/173 (67%), Positives = 133/173 (76%)
Frame = +1
Query: 1 KQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRI 180
K YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RI
Sbjct: 10 KAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARI 69
Query: 181 EGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXE 360
EGD IVCAAY+HELP+YGVKVGLTNYAAAY TG E
Sbjct: 70 EGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDE 129
Query: 361 YNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVSSXSIKRFP 519
YNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++ S KRFP
Sbjct: 130 YNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSI-PHSTKRFP 181
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 251 bits (614), Expect = 1e-66
Identities = 117/173 (67%), Positives = 133/173 (76%)
Frame = +1
Query: 1 KQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRI 180
K YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RI
Sbjct: 10 KAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARI 69
Query: 181 EGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXE 360
EGD IVCAAY+HELP+YGVKVGLTNYAAAY TG E
Sbjct: 70 EGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDE 129
Query: 361 YNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVSSXSIKRFP 519
YNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++ S KRFP
Sbjct: 130 YNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSI-PHSTKRFP 181
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 251 bits (614), Expect = 1e-66
Identities = 117/173 (67%), Positives = 133/173 (76%)
Frame = +1
Query: 1 KQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRI 180
K YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RI
Sbjct: 10 KAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARI 69
Query: 181 EGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXE 360
EGD IVCAAY+HELP+YGVKVGLTNYAAAY TG E
Sbjct: 70 EGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDE 129
Query: 361 YNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVSSXSIKRFP 519
YNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++ S KRFP
Sbjct: 130 YNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSI-PHSTKRFP 181
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 251 bits (614), Expect = 1e-66
Identities = 117/173 (67%), Positives = 133/173 (76%)
Frame = +1
Query: 1 KQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRI 180
K YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RI
Sbjct: 17 KAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARI 76
Query: 181 EGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXE 360
EGD IVCAAY+HELP+YGVKVGLTNYAAAY TG E
Sbjct: 77 EGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDE 136
Query: 361 YNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVSSXSIKRFP 519
YNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++ S KRFP
Sbjct: 137 YNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSI-PHSTKRFP 188
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 249 bits (609), Expect = 5e-66
Identities = 116/173 (67%), Positives = 132/173 (76%)
Frame = +1
Query: 1 KQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRI 180
K YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RI
Sbjct: 10 KAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARI 69
Query: 181 EGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXE 360
EGD IVCA Y+HELP+YGVKVGLTNYAAAY TG E
Sbjct: 70 EGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDE 129
Query: 361 YNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVSSXSIKRFP 519
YNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++ S KRFP
Sbjct: 130 YNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSI-PHSTKRFP 181
>BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein.
Length = 101
Score = 173 bits (422), Expect = 2e-43
Identities = 75/89 (84%), Positives = 86/89 (96%)
Frame = +1
Query: 1 KQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRI 180
K YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+ CQ+AY+RI
Sbjct: 10 KAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARI 69
Query: 181 EGDHIVCAAYSHELPRYGVKVGLTNYAAA 267
EGD IVCAAY+HELP+YGVKVGLTNYAAA
Sbjct: 70 EGDMIVCAAYAHELPKYGVKVGLTNYAAA 98
>AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5
protein.
Length = 126
Score = 161 bits (390), Expect = 2e-39
Identities = 74/123 (60%), Positives = 88/123 (71%)
Frame = +1
Query: 124 LIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXX 303
+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 1 MIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL 60
Query: 304 XXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGG 483
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGG
Sbjct: 61 NRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGG 120
Query: 484 LNV 492
L++
Sbjct: 121 LSI 123
>U76609-1|AAB18361.1| 145|Homo sapiens ribosomal L5 protein
protein.
Length = 145
Score = 44.8 bits (101), Expect = 2e-04
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +1
Query: 430 TTTGARVFGAMKGAVDGGLNVSSXSIKRFP 519
TTTG +VFGA+KGAVDGGL++ S KRFP
Sbjct: 1 TTTGNKVFGALKGAVDGGLSI-PHSTKRFP 29
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,816,443
Number of Sequences: 237096
Number of extensions: 1519443
Number of successful extensions: 3243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3234
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -