Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306C03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   189   9e-49
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   189   9e-49
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)                27   7.7  
At4g02280.1 68417.m00309 sucrose synthase, putative / sucrose-UD...    27   7.7  

>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  189 bits (461), Expect = 9e-49
 Identities = 94/170 (55%), Positives = 115/170 (67%)
 Frame = +1

Query: 7   YFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEG 186
           YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  Q+  + I G
Sbjct: 12  YFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAG 71

Query: 187 DHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYN 366
           D +  +AY+HELP+YG+ VGLTNYAAAY TG                          +++
Sbjct: 72  DIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFS 131

Query: 367 VEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVSSXSIKRF 516
           VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++   S KRF
Sbjct: 132 VEPTDS-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDI-PHSDKRF 179


>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  189 bits (461), Expect = 9e-49
 Identities = 94/170 (55%), Positives = 115/170 (67%)
 Frame = +1

Query: 7   YFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEG 186
           YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  Q+  + I G
Sbjct: 12  YFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAG 71

Query: 187 DHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYN 366
           D +  +AY+HELP+YG+ VGLTNYAAAY TG                          +++
Sbjct: 72  DIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFS 131

Query: 367 VEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVSSXSIKRF 516
           VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++   S KRF
Sbjct: 132 VEPTDS-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDI-PHSDKRF 179


>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
          Length = 130

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 482 PPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLS 378
           PP+  P  AP T  P  V   PTS    +AP P S
Sbjct: 41  PPAATP--APTTTPPPAVSPAPTSSPPSSAPSPSS 73


>At4g02280.1 68417.m00309 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative strong similarity to
           sucrose synthase GI:6682841 from [Citrus unshiu]
          Length = 809

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 161 WHVTSLLERRTIRRYLGVLYL 99
           W   S LERR  RRYL + Y+
Sbjct: 773 WKYVSKLERRETRRYLEMFYI 793


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,889,252
Number of Sequences: 28952
Number of extensions: 214095
Number of successful extensions: 529
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)