Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306B12f
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    27   2.2  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   2.9  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    26   3.8  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    25   5.0  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   6.7  
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma...    25   8.8  

>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = +2

Query: 305 CSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLYRSTL 427
           C   SY   +  S  SI V    C LH   LC C L   TL
Sbjct: 664 CKAFSYFSQVACSCKSITV----CPLHIEYLCKCDLSNKTL 700


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 513 DVAPNFFTSCYDXCLGCQSSLRRRMEQKHRVLRYKEQKHR 394
           D A N     ++   G  + LR+  EQK    RY+ QK +
Sbjct: 186 DKAVNLSAHSFNKKRGINAELRQYQEQKTEAERYQSQKEK 225


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 417 RYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQL 301
           + + +KH  ++ ++QK +    L K LR +R  E  E+L
Sbjct: 45  KVERRKHAQVQLEQQKREERLALRKSLREQRKRELAERL 83


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 480 DXCLGCQSSLRRRMEQKHRVLRYKEQKHRVLRCKEQKPQYTAMLHKE 340
           D  L  + + R+  E++    R KEQ+  V++ ++QK +Y   L ++
Sbjct: 166 DLVLARKEAKRKLKEKEEEARRQKEQQQGVVQVRQQK-EYLKELERQ 211


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 317  SYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLY 415
            S++RSL S L       G  +L     C CSL+
Sbjct: 1078 SFLRSLESVLLQRLTKAGTATLMEIVPCLCSLF 1110


>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -1

Query: 447 RRMEQKHRVLRYKEQKHRVLRCK-EQKPQYTAMLHKELRSERM*EQPEQLQLR 292
           +RMEQK ++   KE++  + R K EQ+  +   +    +++   E+ E LQ +
Sbjct: 37  KRMEQKRKLDEIKEREKELKREKEEQRAAHAEKIRTRRQAKADRERMELLQAK 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,326
Number of Sequences: 5004
Number of extensions: 20475
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)