Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306B12f
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0571 - 25071440-25071607,25071711-25072383,25072449-25073242     29   1.7  
04_01_0377 - 4970034-4970687                                           28   5.1  

>11_06_0571 - 25071440-25071607,25071711-25072383,25072449-25073242
          Length = 544

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 344 LCSIAVYCGFCSLHRSTLC 400
           LC I + CG CSLH   LC
Sbjct: 505 LCYITMNCGACSLHAKQLC 523


>04_01_0377 - 4970034-4970687
          Length = 217

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 167 CGSDDRSGGCYKG 129
           CGS  +SGGCYKG
Sbjct: 178 CGSGCQSGGCYKG 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,998,813
Number of Sequences: 37544
Number of extensions: 176579
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)