Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306B12f
(513 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15) 29 1.7
SB_54038| Best HMM Match : CHCH (HMM E-Value=0.44) 29 2.2
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 29 3.0
SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16) 29 3.0
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_58624| Best HMM Match : E-MAP-115 (HMM E-Value=0.24) 28 5.2
SB_57079| Best HMM Match : DUF1140 (HMM E-Value=3.8) 28 5.2
SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_7444| Best HMM Match : Transposase_1 (HMM E-Value=9.4) 28 5.2
SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1) 28 5.2
SB_13383| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_12076| Best HMM Match : CHCH (HMM E-Value=0.28) 28 5.2
SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077) 27 6.9
SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_16920| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 35.5 bits (78), Expect = 0.026
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = -1
Query: 462 QSSLRRRMEQKHRVL--RYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQ 298
Q L+++ E +HR L +E KHR L ++QK Q+ + ++L+ ++ E+ +QLQ
Sbjct: 383 QERLKQQEEIRHRQLLKEQEELKHRKLLQEQQKLQHKKLQEEKLKHQKQEEEQQQLQ 439
>SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 32.3 bits (70), Expect = 0.24
Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Frame = -1
Query: 462 QSSLRRRMEQKHRVLRYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQLRTVL 283
Q L+++ +Q+ ++ + ++Q+ R+ + ++Q+P+ ++ R ++ +QP Q +
Sbjct: 52 QQQLQQQQQQQQQLQQQQQQQPRLQQQQQQQPRLKQQQQQQPRLKQQQQQPRLKQQQQQQ 111
Query: 282 PLGLLVWQLERSCMKQGQLP--KEQRQQLDR 196
P L Q + +Q Q P K+Q+QQ R
Sbjct: 112 P-RLKQQQQQPRLQQQQQQPRLKQQQQQQPR 141
>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
Length = 430
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 302 SCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLY 415
S GC Y+ ++R SLC++ C F +H S+L F L+
Sbjct: 316 SVRGCRYVHNVRVSLCTL---CAFRYVH-SSLWFSELF 349
>SB_54038| Best HMM Match : CHCH (HMM E-Value=0.44)
Length = 75
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/58 (22%), Positives = 25/58 (43%)
Frame = -1
Query: 474 CLGCQSSLRRRMEQKHRVLRYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQL 301
C + R +Q H + R +Q H + RC +Q + + + R +QP ++
Sbjct: 14 CTQPPHEMSRCTQQPHEMSRCTQQPHEMSRCTQQPHEMSRCTQPQHEMSRCTQQPNEM 71
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/86 (22%), Positives = 42/86 (48%)
Frame = -1
Query: 462 QSSLRRRMEQKHRVLRYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQLRTVL 283
Q R +Q+ + L+ ++Q+ + ++Q Q +EL+ ++ +Q +QLQ + L
Sbjct: 1505 QQRQRELQQQQQQQLQQQQQQQLQQQQQQQLQQQQLQRQRELQQQQQQQQQQQLQRQREL 1564
Query: 282 PLGLLVWQLERSCMKQGQLPKEQRQQ 205
+ Q + +Q + ++ RQQ
Sbjct: 1565 QQQQHLQQQRQLQQQQQYIEQKIRQQ 1590
>SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
Length = 814
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/86 (22%), Positives = 42/86 (48%)
Frame = -1
Query: 462 QSSLRRRMEQKHRVLRYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQLRTVL 283
Q R +Q+ + L+ ++Q+ + ++Q Q +EL+ ++ +Q +QLQ + L
Sbjct: 159 QQRQRELQQQQQQQLQQQQQQQLQQQQQQQLQQQQLQRQRELQQQQQQQQQQQLQRQREL 218
Query: 282 PLGLLVWQLERSCMKQGQLPKEQRQQ 205
+ Q + +Q + ++ RQQ
Sbjct: 219 QQQQHLQQQRQLQQQQQYIEQKIRQQ 244
>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 290 VRSCSCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLYRSTLCFCSIRRLS 454
V S SC GC S R + S++ C C H T+ S ++ C C + +S
Sbjct: 25 VVSLSCRGCVVSLSCRDCVVSVSCLCRIC--HVVTVSNLSHDVTSSCLCHVVTVS 77
>SB_58624| Best HMM Match : E-MAP-115 (HMM E-Value=0.24)
Length = 298
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = -1
Query: 450 RRRMEQKHRVLRYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQ 298
RR E++ R+ R +E+K R + +E+K + + + ER ++ ++L+
Sbjct: 97 RREKEEEERLKRAEEEKRREEKRREEKRREEELKRERKEQERREKERQRLE 147
>SB_57079| Best HMM Match : DUF1140 (HMM E-Value=3.8)
Length = 235
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -1
Query: 381 KEQKPQYTAMLHKELRSER-M*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQ 205
KE+ + + + KEL ++ M +Q QLQ + + +V Q ++ +Q Q + Q+QQ
Sbjct: 139 KERADKNSELREKELNMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQPQQQQ 198
Query: 204 LDR 196
L +
Sbjct: 199 LQQ 201
>SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 882
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 323 IRSLRSSLCSIAVYCGFCSLHRSTLCFCSLY 415
++ S CSI + G+CS+H ++ +CS+Y
Sbjct: 712 VQYFASGYCSIHLASGYCSIHFAS-GYCSIY 741
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 338 SSLCSIAVYCGFCSLHRSTLCFCSLYRSTLCFCSI 442
S CSI G+CS+H ++ + S++ ++ +CSI
Sbjct: 753 SGYCSIYFASGYCSIHFASSVYFSIHLAS-GYCSI 786
>SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -1
Query: 381 KEQKPQYTAMLHKELRSER-M*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQ 205
KE+ + + + KEL ++ M +Q QLQ + + +V Q ++ +Q Q + Q+QQ
Sbjct: 31 KERADKNSELREKELNMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQPQQQQ 90
Query: 204 LDR 196
L +
Sbjct: 91 LQQ 93
>SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -1
Query: 381 KEQKPQYTAMLHKELRSER-M*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQ 205
KE+ + + + KEL ++ M +Q QLQ + + +V Q ++ +Q Q + Q+QQ
Sbjct: 30 KERADKNSELREKELNMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQPQQQQ 89
Query: 204 LDR 196
L +
Sbjct: 90 LQQ 92
>SB_7444| Best HMM Match : Transposase_1 (HMM E-Value=9.4)
Length = 167
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -1
Query: 381 KEQKPQYTAMLHKELRSER-M*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQ 205
KE+ + + + KEL ++ M +Q QLQ + + +V Q ++ +Q Q + Q+QQ
Sbjct: 71 KERADKNSELREKELNMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQPQQQQ 130
Query: 204 LDR 196
L +
Sbjct: 131 LQQ 133
>SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)
Length = 810
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/85 (22%), Positives = 39/85 (45%)
Frame = -1
Query: 450 RRRMEQKHRVLRYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQLRTVLPLGL 271
RRR ++K + +K K C+E K Y L E S+ + E L+ + L +
Sbjct: 252 RRRRQEKKQKRSWKHIKRHRTTCREYKMLYKKKLLNEKLSKEQLKNIENLE-ENLDVLNI 310
Query: 270 LVWQLERSCMKQGQLPKEQRQQLDR 196
+ + + + L K++R++ ++
Sbjct: 311 TICRQQAEYEEAAALRKKKRKEAEK 335
>SB_13383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +1
Query: 370 LLLLTSQHPMLLLLISQ-HPMLLL---HSSPQ*RLTT 468
LLL+T PMLLL+ S PMLLL H+ P L T
Sbjct: 14 LLLVTYARPMLLLVTSHIRPMLLLVTSHARPMLLLVT 50
>SB_12076| Best HMM Match : CHCH (HMM E-Value=0.28)
Length = 115
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/65 (21%), Positives = 27/65 (41%)
Frame = -1
Query: 474 CLGCQSSLRRRMEQKHRVLRYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQL 295
C + + R +Q H + R + H + RC +Q + + + R +QP ++
Sbjct: 44 CTQQPNEMSRCTQQPHEMSRCTQPPHEMSRCTQQPNEMSRCTQQPNEMSRCTQQPNKMSR 103
Query: 294 RTVLP 280
T P
Sbjct: 104 CTQQP 108
>SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)
Length = 599
Score = 27.5 bits (58), Expect = 6.9
Identities = 30/123 (24%), Positives = 61/123 (49%)
Frame = -1
Query: 450 RRRMEQKHRVLRYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQLRTVLPLGL 271
+RR + + ++ R KE++ R +E++ Q A + E R + E+ Q Q+ +
Sbjct: 108 KRRQDLQDKLKREKEEREAKERAEEERRQ-RAKMEAEQRRQAELEKQRQQQMEMEREQEV 166
Query: 270 LVWQLERSCMKQGQLPKEQRQQLDR*SF*KRTGSLWQ*RPERGLLQGVLGPLTEALKLPP 91
L Q+ + + Q Q+ E+++Q + + KR + + ++GL Q ++ L + LK
Sbjct: 167 LRKQMIQQRL-QAQIEAERQRQKE---WQKR--KVEELLNQKGLEQDIVNNLKQRLKKLE 220
Query: 90 EVL 82
E L
Sbjct: 221 EEL 223
>SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 504 PNFFTSCYDXCLGCQSSLRRRMEQKHRVLRYK--EQKHRVLR 385
P + YD L Q R+EQ++RV R + E++HRV R
Sbjct: 9 PFILYAIYDYTLPQQILFTHRLEQRYRVERRQRLERRHRVKR 50
>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 287 TVRSCSCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLC 400
T R C+ GC + SS S +V CG+ R C
Sbjct: 734 TTRRCNPGGCKTHWFIGSSFTSCSVTCGYGVKERLVFC 771
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = +2
Query: 314 CSYIRSLRSSLCSIAVYCGFCSLHRSTLCF-----CSLYRSTLCF 433
C +R +C CG C+L R +C+ C+L R +C+
Sbjct: 5848 CDMCNLVRRDMCY--PICGMCNLVRRDMCYKICGMCNLVRRDMCY 5890
>SB_16920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = -2
Query: 335 VASVCRNNRSSCSYVRCC 282
VAS C++NRS+ +Y+RCC
Sbjct: 134 VASRCQSNRST-NYLRCC 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,209,040
Number of Sequences: 59808
Number of extensions: 196030
Number of successful extensions: 648
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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