Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306B12f
(513 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 29 2.0
Z68108-15|CAJ58502.1| 582|Caenorhabditis elegans Hypothetical p... 28 3.4
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 28 3.4
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p... 28 3.4
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p... 28 3.4
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p... 28 3.4
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p... 28 3.4
Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z68108-5|CAD44152.2| 725|Caenorhabditis elegans Hypothetical pr... 28 3.4
U46670-3|AAP46279.1| 312|Caenorhabditis elegans Nuclear hormone... 28 3.4
U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone... 28 3.4
U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone... 28 3.4
AY390537-1|AAQ94949.1| 692|Caenorhabditis elegans SMA-9 class B... 28 3.4
AY389809-1|AAR28681.1| 909|Caenorhabditis elegans zinc finger t... 28 3.4
AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear recep... 28 3.4
AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear recep... 28 3.4
AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear recep... 28 3.4
AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear recep... 28 3.4
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 4.5
U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone... 27 6.0
U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone... 27 6.0
U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone... 27 6.0
AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear recep... 27 6.0
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 27 7.9
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 27 7.9
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 27 7.9
AL032626-26|CAA21533.2| 143|Caenorhabditis elegans Hypothetical... 27 7.9
AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical ... 27 7.9
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 27 7.9
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 352 HRRILRLLLLTSQHPMLLLL--ISQHPMLLLHSSP 450
HR I +L+ H MLLLL +Q P+L LH++P
Sbjct: 1460 HRPIKKLINSYESHRMLLLLENCAQLPILCLHNTP 1494
>Z68108-15|CAJ58502.1| 582|Caenorhabditis elegans Hypothetical
protein T05A10.1k protein.
Length = 582
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 447 RRMEQKHRVLRYKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 183 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 237
Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
L QL++ ++Q QL ++Q QQ+
Sbjct: 238 LQQQQLQQQQLQQQQLQQQQLQQV 261
>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
protein T05A10.1a protein.
Length = 2066
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 447 RRMEQKHRVLRYKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214
Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
L QL++ ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238
>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
protein T05A10.1f protein.
Length = 2048
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 447 RRMEQKHRVLRYKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214
Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
L QL++ ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238
>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
protein T05A10.1e protein.
Length = 2101
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 447 RRMEQKHRVLRYKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214
Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
L QL++ ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238
>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
protein T05A10.1d protein.
Length = 2134
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 447 RRMEQKHRVLRYKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214
Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
L QL++ ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238
>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
protein T05A10.1g protein.
Length = 1888
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 447 RRMEQKHRVLRYKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214
Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
L QL++ ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238
>Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical
protein T05A10.1i protein.
Length = 1927
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 447 RRMEQKHRVLRYKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214
Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
L QL++ ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238
>Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical
protein T05A10.1j protein.
Length = 1509
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 447 RRMEQKHRVLRYKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214
Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
L QL++ ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238
>Z68108-5|CAD44152.2| 725|Caenorhabditis elegans Hypothetical
protein T05A10.1b protein.
Length = 725
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 447 RRMEQKHRVLRYKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 183 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 237
Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
L QL++ ++Q QL ++Q QQ+
Sbjct: 238 LQQQQLQQQQLQQQQLQQQQLQQV 261
>U46670-3|AAP46279.1| 312|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform d protein.
Length = 312
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLYRSTLC 430
SC+GC + R++ S I Y G C ++++ C C R C
Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133
>U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform c protein.
Length = 440
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLYRSTLC 430
SC+GC + R++ S I Y G C ++++ C C R C
Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133
>U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform a protein.
Length = 445
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLYRSTLC 430
SC+GC + R++ S I Y G C ++++ C C R C
Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133
>AY390537-1|AAQ94949.1| 692|Caenorhabditis elegans SMA-9 class B
protein.
Length = 692
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 447 RRMEQKHRVLRYKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 183 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 237
Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
L QL++ ++Q QL ++Q QQ+
Sbjct: 238 LQQQQLQQQQLQQQQLQQQQLQQV 261
>AY389809-1|AAR28681.1| 909|Caenorhabditis elegans zinc finger
transcription factorSMA-9 protein.
Length = 909
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 447 RRMEQKHRVLRYKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 160 QQQAQQQXQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214
Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
L QL++ ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238
>AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 436
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLYRSTLC 430
SC+GC + R++ S I Y G C ++++ C C R C
Sbjct: 80 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 124
>AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 445
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLYRSTLC 430
SC+GC + R++ S I Y G C ++++ C C R C
Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133
>AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 440
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLYRSTLC 430
SC+GC + R++ S I Y G C ++++ C C R C
Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133
>AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 440
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLYRSTLC 430
SC+GC + R++ S I Y G C ++++ C C R C
Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/56 (28%), Positives = 19/56 (33%)
Frame = -2
Query: 200 TVEVSRNVLGACGSDDRSGGCYKGCWGXXXXXXXXXXXXXXXQDGAGFG*RQCDGG 33
T+ VS + + G GGC GC G G G G C GG
Sbjct: 14 TIHVSSFLFPSAGGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGG 69
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/56 (28%), Positives = 19/56 (33%)
Frame = -2
Query: 200 TVEVSRNVLGACGSDDRSGGCYKGCWGXXXXXXXXXXXXXXXQDGAGFG*RQCDGG 33
T+ VS + + G GGC GC G G G G C GG
Sbjct: 14 TIHVSSFLFPSAGGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGG 69
>U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform c protein.
Length = 455
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLYRSTLCF 433
SC+GC + R+L + + G C + +S C C R CF
Sbjct: 47 SCNGCKTFFRRALVNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCF 92
>U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform b protein.
Length = 434
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLYRSTLCF 433
SC+GC + R+L + + G C + +S C C R CF
Sbjct: 31 SCNGCKTFFRRALVNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCF 76
>U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform a protein.
Length = 439
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLYRSTLCF 433
SC+GC + R+L + + G C + +S C C R CF
Sbjct: 31 SCNGCKTFFRRALVNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCF 76
>AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear receptor
NHR-40 protein.
Length = 439
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLYRSTLCF 433
SC+GC + R+L + + G C + +S C C R CF
Sbjct: 31 SCNGCKTFFRRALVNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCF 76
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
protein ZK1067.1 protein.
Length = 1323
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +2
Query: 302 SCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCF-CSLY 415
SCS C Y S S C + G C+ H C CS Y
Sbjct: 247 SCSQCFYSNSTSSYECCDSACLGGCTGHGPKNCIACSKY 285
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +2
Query: 302 SCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCF-CSLY 415
SCS C Y S S C + G C+ H C CS Y
Sbjct: 247 SCSQCFYSNSTSSYECCDSACLGGCTGHGPKNCIACSKY 285
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +2
Query: 302 SCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCF-CSLY 415
SCS C Y S S C + G C+ H C CS Y
Sbjct: 298 SCSQCFYSNSTSSYECCDSACLGGCTGHGPKNCIACSKY 336
>AL032626-26|CAA21533.2| 143|Caenorhabditis elegans Hypothetical
protein Y37D8A.15 protein.
Length = 143
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 438 EQKHRVLRYKEQKHRVLRCKEQKPQY 361
++KH LR+ ++KH LR ++K +Y
Sbjct: 102 KRKHEYLRFGKRKHEYLRFGKRKHEY 127
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 438 EQKHRVLRYKEQKHRVLRCKEQKPQY 361
++KH LR+ ++KH LR ++K +Y
Sbjct: 112 KRKHEYLRFGKRKHEYLRFGKRKHEY 137
>AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical
protein K06A5.4 protein.
Length = 877
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -1
Query: 468 GCQSSLRRRMEQKHRVLRYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQ 298
GCQ + E+ R ++ K R R +E+K + A E +ER ++ E+L+
Sbjct: 151 GCQKNSENEKERNRREREEQQTKERERRLEEEKQRRDA----EAEAERRRKEEEELE 203
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = -1
Query: 450 RRRMEQKHRVLRYKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQL 295
R+ + H ++ ++Q +RVL C++ KP ++++ R P + L
Sbjct: 572 RKFATRHHAMMMAQQQTNRVLICRQCKPPQRLTTARQIKEHRARHLPRKSHL 623
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,106,975
Number of Sequences: 27780
Number of extensions: 134134
Number of successful extensions: 533
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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