Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306B11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 1.7
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 2.2
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 26 3.9
SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit L11... 25 5.2
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 25 5.2
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 6.8
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 25 6.8
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces... 25 9.0
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 25 9.0
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 9.0
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 9.0
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 25 9.0
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 25 9.0
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 119 TSATTIPAFSQTKASHRLSSHSKPASQPQQDHRSRLTALPGPTARTYTASS 271
T + P+ T +SH S+ + PA+ Q R ++P T++ASS
Sbjct: 240 TVQSRAPSVDTTSSSHSFSARNIPANVSMQQQMGRRGSIP-VNPSTFSASS 289
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 487 TCIYALYLE--NVVSEIQASVNYLALYDGYPPHH 392
+CI L+L+ + +I+ + L LYD YPP H
Sbjct: 506 SCIKRLHLKLSKGIMDIKVLTHQLMLYDLYPPAH 539
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 130 HNPRILADKSKSSTVVPQQASIAASTGPSQPTHRAS 237
H P + DK+ VP +A++ + G S+P AS
Sbjct: 65 HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100
>SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 222 DSPRFLVLRHAHTLPHHAE 278
+SP FL+L+H + LP A+
Sbjct: 34 ESPNFLILQHNNLLPREAK 52
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +3
Query: 159 QVIDCRPTASQHRSLNRTIAADSPRFLVLRHAHTLPHHAEFKLSLDSPQTSSSTGTCKLI 338
QV DC H SL+ + S LP+ KLS++S +T+ S + + +
Sbjct: 487 QVADCM-NKLLHTSLDGKKLSPSELCNKFSDGEGLPNRKVSKLSVESDETAVSASSGESV 545
Query: 339 SARTTITKNDTTS 377
+T+T + S
Sbjct: 546 PTDSTLTDTKSKS 558
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 116 RTSATTIPAFSQTKASHRLSSHSKPASQPQ 205
R T+ P+FS H LS S SQPQ
Sbjct: 64 RKQTTSSPSFSHAAPLHPLSPPSFTHSQPQ 93
>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 99 SSSAHQELRLPQSPHSRRQKQVIDCRPTASQHRSLNRTIAADSPRFLV 242
S + + S S + K I+ A H++ NRT DSP +V
Sbjct: 295 SHQPYHYTNVKDSQGSHQTKVTIEENMEAPSHQAANRTTLTDSPLGIV 342
>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +1
Query: 97 IHHQRIKNFGYHNPRILADKSKSSTVVPQQASIAASTGPSQP 222
+H+ R+ + P + S+ + +V + + A T PS P
Sbjct: 66 LHYDRLSGISFFQPNDPEELSRKTLLVKNKKTGAIETAPSIP 107
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 114 DALMMNQKVACSNYVGVTSLGRYTTK 37
+ + N+K C N+ G+ +L YTT+
Sbjct: 305 ETIRCNKKSNCYNWNGIAALETYTTE 330
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 131 TIPAFSQTKASHRLSSHSKPASQPQQDHRSRLTALP 238
++P+ T+ H L S P+ QP + +R +LP
Sbjct: 695 SLPSQQTTETKH-LRKESTPSKQPTEGQHTRQESLP 729
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 119 TSATTIPAFSQTKASHRLSSHSKPASQPQQDHRSRLTALP 238
T ++P+ T+ H L S P+ QP + +R +LP
Sbjct: 723 TRQESLPSQQTTETKH-LRKESIPSKQPTEGQHARQESLP 761
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 85 RNLLIHHQRIKNFGYHNPRILA-DKSKSSTVVPQQAS 192
R L+ +QR + + NP + A +K + ++PQ+++
Sbjct: 597 RRLIDEYQRQLHIDFENPAVSASEKLSTEEIIPQESN 633
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +2
Query: 167 RLSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRRIQAQSRLTADFEQHWHLQA 334
+L K AS + SR+ +P S+ QSRL D + +H Q+
Sbjct: 193 KLEQQEKEASNVSE--ASRIATIPPMILSEEEVKSQYFNDQSRLVTDCPKFYHFQS 246
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 11 ARGSVEDLPFVVYLPKLVTPT*FEHATF*FIISASRTSATTIPAFS 148
AR D+ Y+ + V P F+HA ++SA + IP FS
Sbjct: 231 ARFRTSDIKEAEYVCERVVPQ-FQHANSGVVLSAVKVIMVHIPLFS 275
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,156
Number of Sequences: 5004
Number of extensions: 45184
Number of successful extensions: 185
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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