Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306B11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476... 35 0.034
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 32 0.32
12_01_1069 - 11060045-11060262,11060404-11060545,11060624-110607... 29 3.0
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944... 29 3.0
06_03_0394 - 20342756-20343310,20343400-20343591,20343689-20343925 29 3.0
04_03_0822 - 20054832-20055179,20056794-20056847,20057561-200576... 29 3.0
04_01_0272 + 3624910-3625247,3625286-3625853,3625920-3626895,362... 29 3.0
01_06_0950 - 33265653-33265802,33265905-33265961,33266046-332661... 29 3.0
04_04_1342 + 32775582-32775796,32776589-32776794,32777356-327774... 28 4.0
09_04_0143 + 15056435-15056732,15056808-15057417,15057839-15057917 28 5.2
03_02_0001 + 4844009-4844046,4845155-4845410,4845560-4845704,484... 28 5.2
01_06_1452 - 37457529-37458743 28 5.2
01_06_0945 + 33217310-33217427,33218820-33219433 28 5.2
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 27 6.9
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 27 6.9
11_01_0320 - 2406706-2406943,2407297-2407385,2407463-2408335,240... 27 9.1
11_01_0024 + 163588-163897,164303-164406 27 9.1
05_04_0445 - 21316412-21317162,21317253-21317385,21317634-213177... 27 9.1
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 27 9.1
04_01_0349 - 4570071-4571267 27 9.1
01_06_0250 + 27876358-27879261 27 9.1
>08_02_0733 +
20546072-20546325,20546924-20547017,20547441-20547624,
20547722-20547831,20548328-20548423,20548525-20548679,
20548743-20548986,20549159-20549314,20549600-20549829,
20552213-20552316,20552420-20552505,20552776-20553066,
20553383-20553475,20553640-20553735,20553838-20553939,
20554196-20554266,20554784-20555035,20555786-20556529,
20557038-20557119,20557192-20557347,20557446-20557655,
20558282-20558665
Length = 1397
Score = 35.1 bits (77), Expect = 0.034
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = -2
Query: 121 SS*CADDESEGCVFKLRRGHQFGEVYDKGKIFHRASCRI 5
SS A + + CVF LRRG Q G+ DK FH C I
Sbjct: 4 SSAAAGEGPQLCVFDLRRGQQEGQELDKILFFHPTDCPI 42
>07_03_1632 +
28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 31.9 bits (69), Expect = 0.32
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 177 PTASQHRSLNRTIAADSPRFLVLRHAHTLPHHAEFKLSLDSPQTSSSTG 323
P ++QH + AADS +F V R + ++ H E K S SSS G
Sbjct: 694 PLSNQHAPIRSKSAADSIQFPVERDSKSVDHFVEKKRSKSKNHGSSSDG 742
>12_01_1069 -
11060045-11060262,11060404-11060545,11060624-11060776,
11060942-11061013,11062774-11063082,11063323-11063378,
11066436-11066533,11066616-11066700,11066800-11067001,
11067471-11067542,11069555-11069624,11071829-11072038,
11072337-11072609,11073912-11074183,11075354-11075557
Length = 811
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 108 LMMNQKVACSNYVGVTSLGRYTTKGRSSTEP 16
L NQKV S++VG S KG+SS+EP
Sbjct: 573 LASNQKVGESSHVGSASEKIVAEKGKSSSEP 603
>09_06_0010 -
20193577-20193921,20194014-20194160,20194239-20194495,
20194619-20194826
Length = 318
Score = 28.7 bits (61), Expect = 3.0
Identities = 26/96 (27%), Positives = 38/96 (39%)
Frame = +3
Query: 72 RNLNTQPSDSSSAHQELRLPQSPHSRRQKQVIDCRPTASQHRSLNRTIAADSPRFLVLRH 251
+N + S + H + R P P Q++ P A+ + +T AA +P
Sbjct: 221 KNAASHNKASGNGHAKPRAPHLPPPVSQRRQFQAPPPAAP--TTTKTAAAPAPP------ 272
Query: 252 AHTLPHHAEFKLSLDSPQTSSSTGTCKLISARTTIT 359
F L P TSSST T + +A TT T
Sbjct: 273 --PTASWESFDLLSSMPSTSSSTVTTTMAAATTTTT 306
>06_03_0394 - 20342756-20343310,20343400-20343591,20343689-20343925
Length = 327
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = -3
Query: 201 GCDAGLLWDDSR*LAFVCE-NAGIVV-----AEVLDALMMNQKVACSNYVGVTSL 55
GCDA +L DD+ L F E NAG + EV+DA+ + AC V +
Sbjct: 80 GCDASILLDDT--LTFTGEKNAGANINSVRGYEVIDAIKSQVEAACKGVVSCADI 132
>04_03_0822 -
20054832-20055179,20056794-20056847,20057561-20057657,
20057752-20057780
Length = 175
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +2
Query: 164 HRLSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRRIQAQ 289
HR SSH P+S P TA P A ++SSR + AQ
Sbjct: 142 HRSSSHGHPSSSP--------TAAAAPAAAVQSSSSRTVAAQ 175
>04_01_0272 +
3624910-3625247,3625286-3625853,3625920-3626895,
3627053-3627087
Length = 638
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = +3
Query: 189 QHRSLNRTIAADSPRFLVLRHAHTLPHHAEFKLSLDSP 302
+ RS R AD FLV RHAH L H +F + DSP
Sbjct: 170 RQRSFKRE--ADEEEFLV-RHAHALFHICKFAVVDDSP 204
>01_06_0950 -
33265653-33265802,33265905-33265961,33266046-33266111,
33266252-33266317,33266752-33267217,33267313-33267566
Length = 352
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 173 SSHSKPASQPQQDHRSRLTALPGPTARTYTASSRRI 280
S +K A QP+ D RSR L P A TYT +S +
Sbjct: 305 SESTKDAEQPKPDLRSRGLCLV-PVASTYTVASETV 339
>04_04_1342 +
32775582-32775796,32776589-32776794,32777356-32777492,
32778758-32778860,32778961-32779079,32779282-32779346,
32779426-32779642,32779713-32779934
Length = 427
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 224 VGCDGPVEAAMLACCGTTVDDLLLSA 147
V GP AA L CC +TVDD ++SA
Sbjct: 38 VALAGPA-AAQLRCCASTVDDGVVSA 62
>09_04_0143 + 15056435-15056732,15056808-15057417,15057839-15057917
Length = 328
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +2
Query: 107 SASRTSATTIPAFSQTKASHRLSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRR 277
+A+ + T + S ++ S S+ +P+S P + +S+L + GP+ T T R+
Sbjct: 57 AAAADADTAQSSASSSRPSAAASTFGEPSSLPDRKGKSKLLSEDGPSESTTTRRWRK 113
>03_02_0001 +
4844009-4844046,4845155-4845410,4845560-4845704,
4845747-4845931,4847011-4847268,4847395-4847476,
4847562-4847641
Length = 347
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +2
Query: 158 ASHRLSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRRIQAQSRLTADFEQHWHLQA 334
+S ++ ++ S Q D+R L L P R+YT + + + F+Q W + A
Sbjct: 106 SSSGVTVKTEDGSVYQADYRHGLCQLGSPAERSYTVQATAASSDRCVLHVFDQKWKILA 164
>01_06_1452 - 37457529-37458743
Length = 404
Score = 27.9 bits (59), Expect = 5.2
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = -2
Query: 340 EISLQVPVLLEVCGESRLSLNSA**GSVCACRRTRKRGESAAMVLLRLRCWLAVGRQSMT 161
E++L V L C E R L + G ++ + E+A+ +R+ +V R + T
Sbjct: 287 ELALAVLDRLCTCAEGRAELVAHAAGVAVVGKKVLRVSEAASERAVRVL--RSVARHAAT 344
Query: 160 CFCLRECGDCGSRSS*CADDESEGCVFKLR-RGHQFGEVYDK 38
L+E CG C SE C K + + H+ +++ +
Sbjct: 345 PAVLQEMAQCGVVGKLCLALRSEQCGVKTKEKAHEVLKLHSR 386
>01_06_0945 + 33217310-33217427,33218820-33219433
Length = 243
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 75 NLNTQPSDSSSAHQELRLPQSPHSRRQKQVIDCRPTASQHRS 200
+L +PS SS + P +P R+ + RP A+QHRS
Sbjct: 41 SLCRRPSPSSPSGARSSSPGTPPRGRRPPPSNLRPAAAQHRS 82
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 90 PSDSSSAHQELRLPQSPHSRRQKQVIDCRPTASQHRSLNRTIA 218
PSD + H+ P+ PH+RR V R R+L+R A
Sbjct: 1215 PSDPEAGHEGAPCPRRPHARR---VAGAREIGRTARTLHRLAA 1254
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 182 SKPASQPQQDHRSRLTALPGPTARTYTASSRRIQAQ-SRLT-ADFEQHWHLQANLSTDND 355
S SQPQQ H ++P PT +A +Q ++T +D +++ + A++ D D
Sbjct: 393 SSGGSQPQQTHPITKPSVPAPTVSGVSAGVSNSASQWPKVTQSDIQKYTKVFADVDRDRD 452
>11_01_0320 -
2406706-2406943,2407297-2407385,2407463-2408335,
2408882-2409310
Length = 542
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 170 LSSHSKPASQPQQDHRS 220
L++H KPAS PQQ H S
Sbjct: 131 LTAHGKPASHPQQVHIS 147
>11_01_0024 + 163588-163897,164303-164406
Length = 137
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 163 SSTVVPQQASIAASTGPSQPTHRASWSYGTH 255
++T P A + P+ PTH WS TH
Sbjct: 70 TTTPPPAGTMTVAPSTPNAPTHHGRWSRQTH 100
>05_04_0445 -
21316412-21317162,21317253-21317385,21317634-21317721,
21317873-21318238
Length = 445
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 201 LNRTIAADSPRFLVLRHAHTLPHHAEFKLSLDSPQTSSSTGT 326
L+ + ADS +FL+ H E+ +S+D+ S S+ T
Sbjct: 149 LSTAVLADSGKFLLSAKRHRKTTCTEYVISMDADNISRSSST 190
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 145 LADKSKSSTVVPQQASIA-ASTGPSQPTHRASW 240
LAD T P+ SI AST PSQ H A W
Sbjct: 1036 LADFVAEWTPAPETVSIPEASTDPSQLPHTAHW 1068
>04_01_0349 - 4570071-4571267
Length = 398
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 415 YDGYPPHHSPPRLEVVSFLVIVVRAEISLQVPVL 314
+D P SPP + VSF +V +SL +P L
Sbjct: 59 FDPTPTSPSPPEEKTVSFYSLVEEKTVSLPLPEL 92
>01_06_0250 + 27876358-27879261
Length = 967
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 195 DAGLLWDDSR*LAFVCENAGIVVAEVLDALMMNQKVACSN--YVGVTSL 55
D+G LWDD A + + ++ +L+AL ++ A S YVGVT L
Sbjct: 818 DSGTLWDDLASYAGLVLDGFLLPQVILNALSRSRARAISAWFYVGVTVL 866
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,809,865
Number of Sequences: 37544
Number of extensions: 341441
Number of successful extensions: 1237
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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