Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306B11f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36290.1 68417.m05160 ATP-binding region, ATPase-like domain-... 30 0.82
At2g32100.1 68415.m03924 ovate protein-related contains TIGRFAM ... 29 1.4
At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein ... 29 1.9
At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containi... 28 3.3
At3g11440.1 68416.m01395 myb family transcription factor (MYB65)... 28 3.3
At2g30250.1 68415.m03682 WRKY family transcription factor 28 3.3
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa... 28 3.3
At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2)... 27 5.8
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 27 5.8
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 27 5.8
At1g06190.1 68414.m00651 expressed protein 27 5.8
At5g49660.1 68418.m06147 leucine-rich repeat transmembrane prote... 27 7.7
At5g48100.1 68418.m05942 laccase family protein / diphenol oxida... 27 7.7
At5g46290.1 68418.m05698 3-oxoacyl-[acyl-carrier-protein] syntha... 27 7.7
At1g70700.1 68414.m08150 expressed protein 27 7.7
>At4g36290.1 68417.m05160 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Mus musculus] GI:5410255; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 635
Score = 30.3 bits (65), Expect = 0.82
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 121 FGYHNPRILADKSKSSTVVPQQASIAASTGPSQ-PTHRASWSYGTHIHCLITQNSSSVST 297
FGY +I ADKSK TV+P Q + PS P+ R S G I + N++S T
Sbjct: 477 FGYQTAQIPADKSK-RTVIPDQPPTVNTYNPSPLPSDRISHG-GPIIREINLSNATSSRT 534
>At2g32100.1 68415.m03924 ovate protein-related contains TIGRFAM
TIGR01568 : uncharacterized plant-specific domain
TIGR01568
Length = 244
Score = 29.5 bits (63), Expect = 1.4
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Frame = +1
Query: 31 SSLCRIPPQTGDPDVI*TRN----LLIHHQRI--KNFGYHNPRILADKSKSSTVVPQQAS 192
SS C IPP + DPD I N +L+++ + N +H+P + D SST A+
Sbjct: 22 SSPC-IPPSSADPDGIIQPNRPSIVLLNNFNLLYHNDNHHHPHRVIDLPSSSTTTTPAAT 80
Query: 193 IAAST 207
++ST
Sbjct: 81 SSSST 85
>At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 362
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 246 RHAHTLPHHAEFKLSLDSPQTSSSTGTCKLISARTTITKNDTTSSL 383
R +H P A F +LD + + + L+ TT+ KN+ + SL
Sbjct: 172 RASHKKPKAASFYSNLDLKKNTYANDAVSLVHTTTTVFKNNNSRSL 217
>At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|Q99615 DnaJ homolog
subfamily C member 7 (Tetratricopeptide repeat protein
2) {Homo sapiens}; contains Pfam profile PF00515: TPR
Domain
Length = 721
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 148 ADKSKSSTVVPQQASIAASTGPSQPTHRASWSYGTHIHCLI--TQNSSSVST 297
A SKSST A S P++ RAS G +I + NS+SV+T
Sbjct: 103 AKSSKSSTTPSSAAQFGGSYSPARAQSRASSQVGAKTGNIIRPSSNSASVTT 154
>At3g11440.1 68416.m01395 myb family transcription factor (MYB65)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 553
Score = 28.3 bits (60), Expect = 3.3
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +3
Query: 87 QPSDSSSAHQELRLPQSPHSRRQKQVIDC--RPTASQHRSLNRTIAADSPRFLVLRHAHT 260
Q S++S+ Q P PHS V P SQ + + D+ +L H
Sbjct: 332 QYSETSAFDQWKTTPSPPHSDLLDSVDAYIQSPPPSQVEESDCFSSCDTGLLDMLLHEAK 391
Query: 261 LPHHAEFKLSLDSPQTSSSTGTC 329
+ A+ L + SPQ S S+ TC
Sbjct: 392 IKTSAKHSLLMSSPQKSFSSTTC 414
>At2g30250.1 68415.m03682 WRKY family transcription factor
Length = 393
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +3
Query: 78 LNTQPSDSSSAHQELRLPQSPHSRRQKQVIDCRPTASQHRSLNRTIAADSPRFLVLRHAH 257
L +QPS++SSA QE Q H ++Q+ + + T + ++S P ++V R+++
Sbjct: 108 LQSQPSNASSALQETYGVQD-HEKKQEMIPNEIATQNNNQSFGTERQIKIPAYMVSRNSN 166
>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 683
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +3
Query: 222 DSPRFLVLRHAHTLPHHAEFKLSLDSPQTSSSTGTCKLISARTTITKNDTTSSLGG 389
D + LRH T F + +P++ S TGT L +T T TTSSL G
Sbjct: 23 DDDGLVGLRHKST--SRFGFFSTPSTPRSDSGTGTYSLRCRTSTATAVSTTSSLPG 76
>At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2) /
gibberellin-responsive protein 2 identical to SP|P46688
Gibberellin-regulated protein 2 precursor {Arabidopsis
thaliana}
Length = 99
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -2
Query: 235 KRGESAAMVLLRLRCWLAVGRQSMTCFCLRECGDCGSRSS*CADDESEG 89
K GE + RC + S T CLR C C SR + C + G
Sbjct: 31 KVGEGVVKIDCGGRCKDRCSKSSRTKLCLRACNSCCSRCN-CVPPGTSG 78
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Frame = +3
Query: 33 FPLSYTSPNW*PRRNLNTQPSDSSSAH-QELRLPQSPHSRRQKQVIDCRPTASQHRSLNR 209
FP + P + P S Q+ PH V +PT Q + +
Sbjct: 103 FPSQHVRPQMMQQHPAQQMPQQSGQQFPQQQSQSMVPHPHGHPSVQTYQPTTQQQQQGMQ 162
Query: 210 TIAADSPRFLVLRHAHTLPHHAEFKLSLDSPQTSSSTGT 326
+ P+ L ++AH+ H+ F+ + + +S T
Sbjct: 163 NQHSQMPQQLSHQYAHSQQHYMGFRPHMQTQGLQNSHQT 201
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +3
Query: 69 RRNLNTQPSDSSSAHQELRLPQSPHSRRQKQVIDCRPTASQHRSLNRT 212
R+N + P S H R P S HS+ + + + RS +R+
Sbjct: 841 RKNRSPSPGKSRRRHVSSRSPHSKHSQHKNTLYSSHDKSRSKRSRSRS 888
>At1g06190.1 68414.m00651 expressed protein
Length = 401
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 161 SHRLSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRRIQAQSRLTA 304
S LSS + P + + T+ PGP + R++QAQ R A
Sbjct: 101 SDMLSSRNGPLFNLSSSPKFQATSSPGPREKEIVELFRKVQAQLRARA 148
>At5g49660.1 68418.m06147 leucine-rich repeat transmembrane protein
kinase, putative contains leucine rich repeat (LRR)
domains, Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 966
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 436 SVNYLALYDGYPPHHSPPRLEVVSFLVIVVRAEISLQVPVLLEVCGESRL 287
++ L+LYD Y PP L S ++ + +E L P+ VC +L
Sbjct: 317 TLKILSLYDNYLTGELPPNLGSSSPMIALDVSENRLSGPLPAHVCKSGKL 366
>At5g48100.1 68418.m05942 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661197]
Length = 565
Score = 27.1 bits (57), Expect = 7.7
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = +2
Query: 236 PGPTARTYTASSRRIQAQSRLTADFEQHWH 325
PGP + + + + Q+R + + HWH
Sbjct: 50 PGPIIKVHKGDTIYVNVQNRASENITMHWH 79
>At5g46290.1 68418.m05698 3-oxoacyl-[acyl-carrier-protein] synthase
I identical to Swiss-Prot:P52410
3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplast
precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase I)
(KAS I) [Arabidopsis thaliana]
Length = 473
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -3
Query: 180 WDDSR*LAFVCENAGIVVAEVLDALMMNQKVACSNYVGVTSLGRYTTKGRSSTEPRAE 7
WD +R + E AG++V E L+ M + Y+G G T+PRA+
Sbjct: 283 WDKARDGFVMGEGAGVLVMESLEHAMKRGAPIVAEYLG----GAVNCDAHHMTDPRAD 336
>At1g70700.1 68414.m08150 expressed protein
Length = 238
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 193 IAASTGPSQPTHRASWSYGTHIHCLITQNSSSVSTH 300
+ TG S+P A YG IH +SSS +TH
Sbjct: 150 LKGETGDSKPVREAERMYGKQIHNTAATSSSS-ATH 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,257,353
Number of Sequences: 28952
Number of extensions: 255659
Number of successful extensions: 889
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -