Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306B08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   5.2  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   6.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.0  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 91  NMEDQ-GAKKILFNKSMLFSLKAELLRKQEEVLVKKQMPQHKAENFK 228
           NMED+    ++    ++L S      R   E+  +KQM Q + ENFK
Sbjct: 145 NMEDELRITRLASENNVLISRIDRTKRHFSELFTQKQMLQLQNENFK 191


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 358 QLFSPMPTLIFYLLVTPQR 302
           +LF+P+ TL FY+L+T  +
Sbjct: 65  KLFTPIETLTFYVLLTSSK 83


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -1

Query: 194 FFTRTSSCFLSSSAFRLNSIDLLNKIFLAP*SSIFKYFLLHV**VPIYYFDYFHLAKKIL 15
           FF + SS  LS + FR ++++  N I       +  +F L        YF YF LAK IL
Sbjct: 338 FFGKRSS--LSLANFRFHTVEPKNNIAKLYDPRLHLFFSLRHNSFFESYFIYFFLAKLIL 395

Query: 14  V 12
           +
Sbjct: 396 L 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,393
Number of Sequences: 5004
Number of extensions: 27468
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)