Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306B08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0409 + 24992944-24993421,24993920-24994000,24994400-249946...    31   0.56 
04_04_1347 + 32803664-32803796,32803891-32804093,32804202-328043...    29   1.7  

>04_04_0409 +
           24992944-24993421,24993920-24994000,24994400-24994622,
           24994709-24994850,24995166-24995555
          Length = 437

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 369 TFNRQCWQFAASRKILGRFQYKK 437
           TF++ CW F  ++ IL RF+Y +
Sbjct: 315 TFDKYCWSFVNNKPILSRFRYPR 337


>04_04_1347 +
           32803664-32803796,32803891-32804093,32804202-32804383,
           32804514-32804798,32804901-32804959,32805052-32805088,
           32805186-32805257,32805336-32806005
          Length = 546

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 479 LFSTIVLVNSCCCCFFVLKSTKNLPAS 399
           +F  ++L+ SCCCCF   K     PA+
Sbjct: 131 VFGIVLLIISCCCCFCRKKYNTYSPAT 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,446,146
Number of Sequences: 37544
Number of extensions: 155738
Number of successful extensions: 355
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)