Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306B08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46961| Best HMM Match : DUF663 (HMM E-Value=0)                      28   4.1  
SB_45420| Best HMM Match : TSP_1 (HMM E-Value=0.0024)                  27   9.4  

>SB_46961| Best HMM Match : DUF663 (HMM E-Value=0)
          Length = 491

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = +1

Query: 76  NRKYLNMEDQGAKKILFNKSMLFSLKAELLRKQEEVLVKKQMPQHKAENFK 228
           +++ + ME Q  KK+      L++   E LRK++E LV+K+   H+AE  K
Sbjct: 410 SKRAVVMEPQ-EKKVYSLMQQLYTANKEKLRKRKEKLVQKR-KVHRAEQAK 458


>SB_45420| Best HMM Match : TSP_1 (HMM E-Value=0.0024)
          Length = 426

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 467 IVLVNSCCCCFFVL 426
           I+L+ SCCCCF  +
Sbjct: 279 ILLIASCCCCFICI 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,132,765
Number of Sequences: 59808
Number of extensions: 179342
Number of successful extensions: 381
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)