Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306B08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   5.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   5.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   5.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.7  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -3

Query: 87  IFSVACVVGT 58
           IF+VACV+GT
Sbjct: 553 IFTVACVLGT 562


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 32  SESNQNSR*VPTTHATENI 88
           SE+N N R  P +HA  ++
Sbjct: 256 SETNHNERSTPRSHAKPSL 274


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 32  SESNQNSR*VPTTHATENI 88
           SE+N N R  P +HA  ++
Sbjct: 256 SETNHNERSTPRSHAKPSL 274


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 32  SESNQNSR*VPTTHATENI 88
           SE+N N R  P +HA  ++
Sbjct: 256 SETNHNERSTPRSHAKPSL 274


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 308 STSTAFKFSLKDFLSDFSDLSVFTGGGLK 222
           S  T   FS++ +L+    L V+T  GLK
Sbjct: 128 SVLTIVAFSMERYLAICHPLRVYTISGLK 156


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 311 SSTSTAFKFSLKDFLSDFSDL 249
           SST T F     DF+ D S L
Sbjct: 378 SSTYTGFGIQSTDFVGDCSSL 398


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,960
Number of Sequences: 438
Number of extensions: 1972
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)