Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306B08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38670.1 68418.m04676 F-box family protein similar to SKP1 in...    28   4.4  
At4g21820.1 68417.m03156 calmodulin-binding family protein conta...    28   4.4  
At1g29030.1 68414.m03553 apoptosis inhibitory 5 (API5) family pr...    28   4.4  
At4g08395.1 68417.m01387 hypothetical protein                          27   5.8  

>At5g38670.1 68418.m04676 F-box family protein similar to SKP1
           interacting partner 6 [Arabidopsis thaliana]
           GI:10716957; contains Pfam profile PF00646: F-box domain
          Length = 291

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 521 LSSLSFATTCSSPDLFSTIVLVNSCCCCFFVLKSTKN 411
           L S SF +  +SP+L+ T  L++    C ++L  T N
Sbjct: 33  LVSKSFRSLIASPELYKTRSLLDRTESCLYILYCTSN 69


>At4g21820.1 68417.m03156 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 1088

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 193 KQMPQHKAENFKPPPVXXXXXXXXXXXXXXXNLKAVDVEELQASRKS 333
           KQ P+  + NF+ P +                LKA ++++ Q+SRK+
Sbjct: 54  KQTPKSSSSNFRRPSMVHSYASRSKVSTSSRRLKAFELQQSQSSRKA 100


>At1g29030.1 68414.m03553 apoptosis inhibitory 5 (API5) family
           protein contains Pfam profile PF05918: Apoptosis
           inhibitory protein 5 (API5)
          Length = 556

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
 Frame = +1

Query: 88  LNMEDQGAKKIL-FNKSMLFSLKAELLRKQEEV------LVKKQMPQHKAENF 225
           L+ ++Q  +K+L F +  +F LK ELL+ Q+E+      L+KK +     E F
Sbjct: 153 LSTDEQIREKVLHFIRDKVFPLKGELLKPQQEMERHITDLIKKSLGDVTGEEF 205


>At4g08395.1 68417.m01387 hypothetical protein
          Length = 232

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 515 SLSFATTCSSPDLFSTIVLVNSCCCCFFVLKSTKNL 408
           S+    TCS P L ST+V+V SC C   V   ++ L
Sbjct: 90  SMVVIETCSQP-LGSTVVVVGSCRCIVVVETCSQTL 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,746,421
Number of Sequences: 28952
Number of extensions: 136112
Number of successful extensions: 366
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)