Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306B06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979... 103 9e-23
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254... 96 1e-20
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136... 31 0.74
03_05_0161 + 21400580-21401695 30 1.3
04_04_0387 + 24869594-24871480 27 6.9
01_05_0630 - 23811576-23811728,23812473-23812561,23812644-238127... 27 6.9
05_07_0031 - 27183252-27183317,27183542-27184282 27 9.1
01_04_0054 - 15456668-15459691 27 9.1
>02_04_0659 -
24797477-24797533,24797614-24797726,24797814-24797943,
24798727-24798828,24798951-24798953
Length = 134
Score = 103 bits (247), Expect = 9e-23
Identities = 57/135 (42%), Positives = 77/135 (57%)
Frame = +1
Query: 16 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 195
MPF R+VE GRVALV G G+LV +VDV+DQ RALVD P + R QI +L LT
Sbjct: 1 MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDI 58
Query: 196 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 375
++ + KA +A + KW S W +KL +++RA + D+DRFK+ A++KR
Sbjct: 59 KIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRG 118
Query: 376 RARTAVFKSLKVKAA 420
A LK AA
Sbjct: 119 GAIRQELAKLKKTAA 133
>04_04_0506 -
25723809-25724299,25725082-25725237,25725316-25725445,
25726484-25726585,25726630-25726671
Length = 306
Score = 96.3 bits (229), Expect = 1e-20
Identities = 50/117 (42%), Positives = 70/117 (59%)
Frame = +1
Query: 19 PFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFR 198
PF R+VE GRVALV G G+LV +VDV+DQ RALVD P + R QI +L LT +
Sbjct: 15 PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIK 72
Query: 199 LKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 369
+ + KA +A + KW S W +KL +++RA + D+DRFK+ A++K
Sbjct: 73 IDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129
>04_03_0611 -
18011469-18012563,18012756-18012920,18013542-18013639,
18014541-18015498
Length = 771
Score = 30.7 bits (66), Expect = 0.74
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -1
Query: 500 GFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVIC 321
G +VA+L R F A + A FK+L + R L +NL S++C
Sbjct: 320 GEIVAYLFRNFEAKFQSLILTLTDTPNVAVAFKILMNVNMERITLAMEIATINLEVSIVC 379
>03_05_0161 + 21400580-21401695
Length = 371
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 179 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 84
SWF C G P P P +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339
>04_04_0387 + 24869594-24871480
Length = 628
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 262 NEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGTFGK 441
+EK+ + QW Q + + +K ++ + + A+ + NR R K ++++ ARA T
Sbjct: 501 SEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRMARANTMVM 556
Query: 442 K 444
K
Sbjct: 557 K 557
>01_05_0630 -
23811576-23811728,23812473-23812561,23812644-23812764,
23812867-23812992,23813399-23813505,23813742-23813856,
23815071-23815274
Length = 304
Score = 27.5 bits (58), Expect = 6.9
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Frame = -1
Query: 518 NNYFLAGFLVAFLVRTFF--AAALGIF-FLPKVPARAAFTFKLLNTAVLARFLL------ 366
N+ +L G + F + + A+LGI LPK A A+ LL T + + L
Sbjct: 126 NSLWLDGRTIHFSINAWVLVVASLGILPILPKHIASKAYRLSLLGTICSSAYSLYVTYGK 185
Query: 365 ----TRAAVNLNLS*SVICARF-SLFANFWAH*LSVHFSLSLASVHAFLTRRVGAVNAYL 201
AA+ L ++ F L + +VH+ ++L V L + V +L
Sbjct: 186 PRAWNMAAIQPWLQSIIVAKDFVHLMFSLMMFTSNVHYKIALLPV---LCWALDHVARFL 242
Query: 200 RRNFVRWSWFKRI 162
RRNF R S ++++
Sbjct: 243 RRNFARSSLYRQL 255
>05_07_0031 - 27183252-27183317,27183542-27184282
Length = 268
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -1
Query: 152 GTPLPGPSTSARVWSITSTTLTNFPFKGPSATRATRPGSTYRAKG 18
G P P P T A T + P G +ATR R S++R G
Sbjct: 24 GQPPPPPPTPAHRLPPTVLPVVALPAGGDAATRDRRRSSSHRRGG 68
>01_04_0054 - 15456668-15459691
Length = 1007
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 106 IDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTA--PTRLVRKAWTDAKL 261
+DQ AL D G+PR R+ ++ T FR+++ + WTD +L
Sbjct: 513 VDQIWALYDDR-DGMPRYYARIRRIDTTNFRVQFTWLEHDAKNEEEDKWTDEEL 565
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,041,000
Number of Sequences: 37544
Number of extensions: 289911
Number of successful extensions: 918
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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