Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306B06f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A) 96 1e-20
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo... 95 3e-20
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila... 30 0.82
At5g02840.2 68418.m00227 myb family transcription factor contain... 29 1.4
At5g02840.1 68418.m00226 myb family transcription factor contain... 29 1.4
At1g01520.1 68414.m00068 myb family transcription factor similar... 29 1.4
At5g15890.1 68418.m01859 expressed protein 29 2.5
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 28 3.3
At1g09770.1 68414.m01096 myb family transcription factor contain... 28 3.3
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 28 4.4
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 27 5.8
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 27 5.8
At1g02290.1 68414.m00171 expressed protein 27 5.8
At5g51150.1 68418.m06342 expressed protein similar to unknown pr... 27 7.7
At4g34950.1 68417.m04954 nodulin family protein similar to nodul... 27 7.7
At1g47710.1 68414.m05302 serpin, putative / serine protease inhi... 27 7.7
>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
Length = 134
Score = 95.9 bits (228), Expect = 1e-20
Identities = 51/119 (42%), Positives = 73/119 (61%)
Frame = +1
Query: 16 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 195
M F R+VE GRVALV G GKLV +VDV+DQ RALVD P + R Q+ L +L LT
Sbjct: 1 MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAP--DMERIQMNLKRLSLTDI 58
Query: 196 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 372
+ +++ +A A + KW +S W +KL +++RA + D+DRFK+ A++KR
Sbjct: 59 VIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKR 117
>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
ribosomal protein L14 - Human,PIR3:JC5954
Length = 134
Score = 94.7 bits (225), Expect = 3e-20
Identities = 50/119 (42%), Positives = 71/119 (59%)
Frame = +1
Query: 16 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 195
M F RYVE GRVALV G GKLV +VDV+DQ RALVD P + R Q+ +L LT
Sbjct: 1 MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAP--DMERIQMNFKRLSLTDI 58
Query: 196 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 372
+ + + +A A + KW +S W +KL +++RA + D+DRFK+ A++K+
Sbjct: 59 VIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKK 117
>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar to
nodule inception protein [Lotus japonicus] GI:6448579;
contains Pfam profile: PF02042 RWP-RK domain
Length = 841
Score = 30.3 bits (65), Expect = 0.82
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
Frame = +1
Query: 19 PFARYVEPGRVALVADGP--LKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTK 192
P+ + P + L + P L ++ DV + R D GS R ++N + T+
Sbjct: 634 PWPHQIPPIDIQLAKNCPPTSTSPLSNLQDVKIENRDAEDSAGSSTSRASCKVNPICETR 693
Query: 193 FRLKYAFTAPTRLVRKAWTDAKLNEKWTESQWA----QKLANKE---------KRAQMTD 333
FRL P+R V A D+ + K + WA Q A+ K D
Sbjct: 694 FRLPTHNQEPSRQV--ALDDSDSSSKNMTNFWAHLTCQDTASPTILQHKLVSIKATYRED 751
Query: 334 YDRFKLTAARVKRNRARTAVFKSLKVKAA 420
RFK++ V + V K LK++ A
Sbjct: 752 IIRFKISPESVSITELKQQVAKRLKLETA 780
>At5g02840.2 68418.m00227 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 217 APTRLVRKAWTDAKLNEKWTESQ 285
AP + VRKA+T K E WTE +
Sbjct: 33 APEKKVRKAYTITKSRESWTEGE 55
>At5g02840.1 68418.m00226 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 217 APTRLVRKAWTDAKLNEKWTESQ 285
AP + VRKA+T K E WTE +
Sbjct: 33 APEKKVRKAYTITKSRESWTEGE 55
>At1g01520.1 68414.m00068 myb family transcription factor similar to
myb-related protein GI:2505876 from [Arabidopsis
thaliana]
Length = 287
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 211 FTAPTRLVRKAWTDAKLNEKWTESQ 285
F PT+ VRK +T K E WTE +
Sbjct: 44 FEDPTKKVRKPYTITKSRENWTEQE 68
>At5g15890.1 68418.m01859 expressed protein
Length = 526
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 140 PGPSTSARVWSITSTTLTNFPFKGPSATRATRP 42
P P T +VW+ TS T P +AT+P
Sbjct: 286 PSPDTDFKVWNYTSYNFTLHVMWSPFLVKATKP 318
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 34 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 186
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g09770.1 68414.m01096 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 844
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/81 (23%), Positives = 37/81 (45%)
Frame = +1
Query: 208 AFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRART 387
AF VRK + + + ++++ E+RA+ T + + + T + +
Sbjct: 692 AFQEEMENVRKKMEEDEKKAEHMKAKYKTYTKGHERRAE-TVWTQIEATLKQAEIGGTEV 750
Query: 388 AVFKSLKVKAARAGTFGKKNI 450
FK+LK + A +F KKN+
Sbjct: 751 ECFKALKRQEEMAASFRKKNL 771
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +1
Query: 166 RLNQLHLTKFRLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRF 345
R + +H K RL+ A PT + D L + S + +E A + DY RF
Sbjct: 64 RSDNVHTVKRRLQIALNFPTEESSLTYGDMVLTNDLSSSVRVGETGFREVAAYLLDYGRF 123
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 34 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 186
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 34 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 186
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g02290.1 68414.m00171 expressed protein
Length = 443
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 135 TRQWST*ATDPLKPTPSHKIPPQIRVHSPYSSREESV 245
T Q S T+P+ P+H +P +RV S YS E+++
Sbjct: 326 TTQRSIQGTEPVFHDPTHTVPSALRV-SNYSITEQNI 361
>At5g51150.1 68418.m06342 expressed protein similar to unknown
protein (gb|AAD46013.1)
Length = 531
Score = 27.1 bits (57), Expect = 7.7
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Frame = -1
Query: 317 RFSLFANFWAH*LSVHFSLSLASV-HAFLTRRVGAVNAYLRRNFVRWS--------WFKR 165
+F L+ + W H S+ FSL+ A V ++F+ R +Y R F++ + R
Sbjct: 205 KFHLWGSHWRHGDSLLFSLACAQVMYSFIMRPETLPKSY--REFIQKTGPVARPVYQAVR 262
Query: 164 ICCLGTPLPGPSTSARVWS 108
CC G P+ S SA + S
Sbjct: 263 ECCRGGPIDVASLSAYISS 281
>At4g34950.1 68417.m04954 nodulin family protein similar to
nodulin-like protein [Arabidopsis thaliana] GI:3329368,
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 567
Score = 27.1 bits (57), Expect = 7.7
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = -1
Query: 503 AGFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNL-S*SV 327
A FLV V F +FFL ++P F + A F + V + L S +
Sbjct: 175 ASFLVLLSVVPFAVCLTAVFFLREIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDI 234
Query: 326 ICARFSLFANFWAH*LSVHFSLSLA-SVHAFLTRRV 222
I + F+ +A L + + +A HAF+ +V
Sbjct: 235 IGIKTGAFSIAFASILLILLASPVAVPFHAFIRSKV 270
>At1g47710.1 68414.m05302 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 391
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +1
Query: 85 LVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTA 219
L ++D I T +D + +PR+Q+++ + + KF+ + F A
Sbjct: 247 LSDLLDKIVSTPGFLD---NHIPRRQVKVREFKIPKFKFSFGFDA 288
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,994,402
Number of Sequences: 28952
Number of extensions: 221115
Number of successful extensions: 674
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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