Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306B05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    54   1e-08

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 54.0 bits (124), Expect = 1e-08
 Identities = 38/106 (35%), Positives = 45/106 (42%)
 Frame = -3

Query: 384 NPYLLGDPDNFTPANPLVTPVHIQPE*YFLFAYAILRSIPNKLGGVXXXXXXXXXXXXLP 205
           NPY   +PD   PA+PL TP+ I PE Y L  YAILR+IPN   GV            LP
Sbjct: 247 NPYGFMEPDCALPADPLKTPMSIVPEWYLLPFYAILRAIPNFQLGVIAMLLSILVLLLLP 306

Query: 204 FTFKKKIQGIQFYPINQXXXXXXXXXXXXXXXIGARPVENPYIITG 67
                 I+G  F P  +               IG    EN +I  G
Sbjct: 307 LLDFSAIRGNSFNPFGKFFFWTFVADFVILAWIGGSHPENVFITIG 352



 Score = 28.7 bits (61), Expect = 0.56
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 520 HQTGSNNPLGLNRNLDKI 467
           H  GS+NPLG+  N+D+I
Sbjct: 202 HTNGSSNPLGVTANMDRI 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,315,913
Number of Sequences: 5004
Number of extensions: 17605
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)