Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306B04f
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    81   7e-17
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   3.7  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   4.9  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    25   4.9  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    24   6.4  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    24   6.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   6.4  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 80.6 bits (190), Expect = 7e-17
 Identities = 34/56 (60%), Positives = 44/56 (78%)
 Frame = +3

Query: 33  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQ 200
           MAKSKNHTNHNQN+KAHRNGIK+P+K R++S    D KF RNQ+F  +G ++  +Q
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQ 56


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 33  MAKSKNHTNHNQNRKAHRNGIKKPRK 110
           +AK  +  NHN ++ A +  I +PRK
Sbjct: 340 LAKRDDRKNHNHSKPATQANILQPRK 365


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 64  TKTAKLTEMVSKSQGRPGTN 123
           T  A +T++VSK  G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 21  KLIKMAKS-KNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 188
           +L+ +A S K H+ +  ++K+++NG KK RK   +S        LR  R     N+K
Sbjct: 169 RLLDLALSEKTHSLNKASKKSNKNGDKK-RKHVSKSNSKHAKHELRTNRMLDGENVK 224


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 51  HTNHNQNRKAHRNGIKKPRKTRHES 125
           HTN  +NR+  + G  K R  R E+
Sbjct: 887 HTNPQENRRRDKGGSVKRRNERTEN 911


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1057

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 19   ENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQN 147
            E+ S+   ++I    TK  KLT    K++ R      LAW+Q+
Sbjct: 999  EDLSEKDLKKIEAKATKKKKLTRNEIKAKERRARERELAWLQS 1041


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 168 KTFDSLKILDPCQGWIRAWSSLAF*YHFC 82
           K   SL +LD     + AW+SL   Y+ C
Sbjct: 518 KDLQSLNVLDISLKGVNAWNSLETSYYNC 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,352,951
Number of Sequences: 5004
Number of extensions: 23051
Number of successful extensions: 59
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)