Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306B04f
         (366 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.38 
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.66 
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)               29   1.2  
SB_40598| Best HMM Match : Stap_Strp_toxin (HMM E-Value=2.7)           29   1.2  
SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)                      29   1.2  
SB_1847| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.7  
SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)                      28   2.7  
SB_3594| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.7  
SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_31788| Best HMM Match : Kazal_1 (HMM E-Value=0)                     27   6.2  
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08)                   26   8.1  
SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)                   26   8.1  
SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1)             26   8.1  

>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 30.7 bits (66), Expect = 0.38
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 75  KAHRNGIKKPRKTRHESTLGM 137
           K HRNGIKKPR  R+ S  G+
Sbjct: 175 KWHRNGIKKPRTNRYPSLKGV 195


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 29.9 bits (64), Expect = 0.66
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 27  IKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQR 164
           IK     N   HNQ   + +   KK RK RH      DP+ L+ ++
Sbjct: 123 IKQTSDNNKPQHNQKNTSKK---KKKRKDRHRKKQDQDPEPLKEKK 165


>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
          Length = 413

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 30  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 128
           K AKSK   NH ++ K  R   KK ++T  +ST
Sbjct: 145 KNAKSKIKRNHGEDNKPKRISTKKRKRTDKDST 177


>SB_40598| Best HMM Match : Stap_Strp_toxin (HMM E-Value=2.7)
          Length = 192

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 36  AKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 140
           +K+ N TN NQ         K P+KT  ++T+  D
Sbjct: 153 SKNNNQTNRNQGNTGITENTKSPKKTNIDATVPSD 187


>SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)
          Length = 1183

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 13   EVENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNP 126
            E E   +W  +R++ +  +  KL E +  ++GR    P
Sbjct: 1029 EFEKYREWHMKRVLPLFVQDTKLREKIENAEGRTSGGP 1066


>SB_1847| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 100 SQGRPGTNPPLAWIQN 147
           S GRPG N P+AW+ +
Sbjct: 31  SPGRPGPNAPIAWVND 46


>SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)
          Length = 622

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 24  LIKMAKSKNHTNHNQNRKAH-RNGIKKPRKTRHESTL 131
           LI   KSK+H NHN+  + H  + I K     H+ T+
Sbjct: 571 LIVYCKSKHHANHNKGCERHFEDDINKCGCRNHDHTI 607


>SB_3594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 24  LIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLR 155
           +I + +   H +HN +R  + N IK   + RH  T      F R
Sbjct: 114 VIGVVRHVRHDDHNLSRSHNNNAIKSRNQNRHFVTQSQQHVFTR 157


>SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 33  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 122
           +  S    +HN  +   R GIK+PR+++ E
Sbjct: 342 LTTSPTMISHNNQQNDSRRGIKRPRRSQEE 371


>SB_31788| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 352

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 21  KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 128
           K IK AK     N+N  RK    G K+P++ R ++T
Sbjct: 86  KPIKKAKVSK-VNNNGRRKEKNRGQKRPKRCRPDTT 120


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 202 SRGRLREKLPEKQRPRNE 255
           SRGR  EK PEKQR +++
Sbjct: 267 SRGRSAEKSPEKQRDKSD 284


>SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08)
          Length = 294

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 75 CGFGYDLYDSLT 40
          CGFGY LY S+T
Sbjct: 41 CGFGYQLYKSIT 52


>SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)
          Length = 538

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 75 CGFGYDLYDSLT 40
          CGFGY LY S+T
Sbjct: 41 CGFGYQLYKSIT 52


>SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1)
          Length = 535

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/58 (24%), Positives = 22/58 (37%)
 Frame = +3

Query: 30  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 203
           K  K K   +H  N     NG+  P+K + +     + K   ++  C   N K    L
Sbjct: 92  KFKKIKKEGDHGNNNTEKPNGVSSPKKKKKKHHHKHEEKHFTDRDHCILDNPKEKTHL 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,457,821
Number of Sequences: 59808
Number of extensions: 177501
Number of successful extensions: 537
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)