Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306B04f
         (366 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical pr...    75   1e-14
AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical...    57   4e-09
AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical ...    44   3e-05
Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   4.1  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   4.1  
Z68748-11|CAL63997.1|  193|Caenorhabditis elegans Hypothetical p...    26   9.5  
U23183-3|AAA64340.3|  496|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical ...    26   9.5  

>Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical
           protein B0513.3 protein.
          Length = 62

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 33/50 (66%), Positives = 39/50 (78%)
 Frame = +3

Query: 33  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGN 182
           MAKSKNHTNHNQN+KAHRNGI KP+K    S  G+D KF++N RF +K N
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGITKPKKHIFLSMKGVDAKFIKNLRFSRKNN 50


>AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical
           protein Y47H9C.14 protein.
          Length = 87

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 25/48 (52%), Positives = 33/48 (68%)
 Frame = +3

Query: 39  KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGN 182
           K +NHTNHN+N KAHRNGI KP+K    S  G   +F+++ RF +K N
Sbjct: 14  KPENHTNHNRNNKAHRNGITKPKKHIFLSIEGSRRQFIKSLRFFRKNN 61


>AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical
           protein Y37H9A.5 protein.
          Length = 167

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = +3

Query: 39  KSKNHTNHNQNRKAHRNGIKKPR 107
           KSKNHTNHNQN  AHR GI KP+
Sbjct: 80  KSKNHTNHNQNNTAHRIGITKPK 102


>Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical
           protein ZC504.3 protein.
          Length = 668

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 72  RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCK 173
           +K HR+ +KK R+ RH   +   P +    R C+
Sbjct: 266 QKLHRDAMKKRREQRHREAVSKLPVYYPGLRGCQ 299


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 93   YHFCELCGFGYDLYDSL 43
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 93   YHFCELCGFGYDLYDSL 43
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>Z68748-11|CAL63997.1|  193|Caenorhabditis elegans Hypothetical
          protein F13H10.9 protein.
          Length = 193

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 83 VSFAVLVMICMIL*LCHFDEFSTSCR 6
          +S AV+V++C+IL +C    +   CR
Sbjct: 8  ISIAVIVLVCVILSICCICIWMCRCR 33


>U23183-3|AAA64340.3|  496|Caenorhabditis elegans Hypothetical
           protein K01A12.3 protein.
          Length = 496

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 51  HTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRN 158
           H  HN +++++  G+K  R +        D  F+RN
Sbjct: 373 HGRHNVSKRSNAAGMKSTRISARSGRTNRDGNFVRN 408


>AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical
           protein Y119C1B.3 protein.
          Length = 450

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +3

Query: 39  KSKNHTNHNQNRKAHRNGIKKPRKTRHES--TLGMDPKFLRNQR 164
           KSK     N    +  NG + P+KTR  S  T    PK  R+ R
Sbjct: 377 KSKKAAAANHKNASRNNGNETPKKTRRSSSTTPTRTPKQRRSSR 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,608,628
Number of Sequences: 27780
Number of extensions: 129427
Number of successful extensions: 415
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)