Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306B04f
         (366 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi...    89   8e-19
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi...    89   1e-18
At1g04030.1 68414.m00390 expressed protein                             32   0.10 
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A...    32   0.13 
At3g48200.1 68416.m05259 expressed protein                             27   3.8  
At5g56560.1 68418.m07058 F-box family protein contains F-box dom...    27   5.0  
At4g37950.1 68417.m05365 expressed protein                             27   5.0  
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil...    26   6.7  
At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containi...    26   6.7  
At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family...    26   8.8  
At3g25950.1 68416.m03234 hypothetical protein                          26   8.8  
At3g17010.1 68416.m02172 transcriptional factor B3 family protei...    26   8.8  

>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
           to 60S ribosomal protein L29 GB:P25886 from (Rattus
           norvegicus)
          Length = 83

 Score = 89.0 bits (211), Expect = 8e-19
 Identities = 38/53 (71%), Positives = 45/53 (84%)
 Frame = +3

Query: 30  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 188
           +MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T GMDPKFLRNQR+ +K N+K
Sbjct: 22  EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 74


>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
           to ribosomal protein L29 GI:7959366 [Panax ginseng]
          Length = 61

 Score = 88.6 bits (210), Expect = 1e-18
 Identities = 38/52 (73%), Positives = 44/52 (84%)
 Frame = +3

Query: 33  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 188
           MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T GMDPKFLRNQR+ +K N+K
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 52


>At1g04030.1 68414.m00390 expressed protein
          Length = 418

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 30  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPK 146
           K AKSK  T   Q++K + N I    + R  S+ G DP+
Sbjct: 215 KSAKSKGRTKQKQSQKENSNFIADQEEKRDSSSFGTDPQ 253


>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845
          Length = 400

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 45  KNHTNHNQNRKAHRNGIKKPRKTRHESTLG 134
           KNHT H++ R ++  G K  RKT   +T G
Sbjct: 88  KNHTFHHKMRMSYSEGSKMKRKTHRNTTFG 117


>At3g48200.1 68416.m05259 expressed protein
          Length = 1088

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 27  IKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKP 191
           I +A S     H+   K H N I     T  ES  G+    +  + F +  NLKP
Sbjct: 548 IMVATSPYIGPHSFISKTHNNMINLKTSTNAESVFGLPLTAMEYRLFFETSNLKP 602


>At5g56560.1 68418.m07058 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 607

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 180 YPSCKTFDSLKILDPCQGWIRAWSSL 103
           YP+C  F SLK L+ C    R W++L
Sbjct: 475 YPACTVFSSLKYLELCTCSAR-WANL 499


>At4g37950.1 68417.m05365 expressed protein 
          Length = 678

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 25  SSKWQSQ-RIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQNF*GIKGFARRVT 183
           +  WQ++ +  Q  T+  K+  M + +  RPGT    AW+  F G   + R +T
Sbjct: 408 AGSWQTENKGYQFWTRADKMG-MFTIANVRPGTYSLYAWVSGFIGDYKYVRDIT 460


>At4g01925.1 68417.m00256 DC1 domain-containing protein low
           similarity to UV-B light insensitive ULI3 [Arabidopsis
           thaliana] GI:17225050; contains Pfam profile PF03107:
           DC1 domain
          Length = 399

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 93  YHFCELCGFGYDLYDSLTLP 34
           YH CE CGF  DLY ++  P
Sbjct: 65  YH-CETCGFDVDLYCAMYPP 83


>At1g62720.1 68414.m07079 pentatricopeptide (PPR)
          repeat-containing protein contains multiple PPR repeats
          Pfam Profile: PF01535
          Length = 426

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 93 YHFCELCGFGYDLY 52
          +H  E+CG G+DLY
Sbjct: 33 FHHMEVCGIGHDLY 46


>At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 1012

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 104 WLFDT--ISVSFAVLVMICMIL*LCHFDEFSTSCRI 3
           W+F T  +S+ F   + IC+     HFDE  +S RI
Sbjct: 889 WVFSTPVVSMVFGSYLYICINWFHIHFDEAFSSLRI 924


>At3g25950.1 68416.m03234 hypothetical protein
          Length = 251

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 134 AKGGFVPGLPWLFDTISVSFAVLVMICMIL 45
           A  G VP   WL   + + FA+LV I  +L
Sbjct: 205 AADGVVPRWAWLSWLVVIGFAILVSILWVL 234


>At3g17010.1 68416.m02172 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 302

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 3   DSARG*KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKF 149
           D + G     + K K   + +  +K  RN +KK  K++ +  L   P+F
Sbjct: 154 DESPGRAEFLVRKKKTEDSKSSKKKMTRNKVKKKSKSKSKQVLDGVPEF 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,317,749
Number of Sequences: 28952
Number of extensions: 125879
Number of successful extensions: 360
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)