Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306B02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 140 2e-34
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 27 1.7
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 3.0
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 3.9
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 3.9
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 5.2
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 5.2
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 6.8
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 9.0
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 25 9.0
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 140 bits (338), Expect = 2e-34
Identities = 70/137 (51%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Frame = +1
Query: 112 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 291
NPLF RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLD
Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83
Query: 292 KTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 468
K TA +FK+L KYRPET +P ++ G N V L+
Sbjct: 84 KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143
Query: 469 EKKKAQLVVIAHDVDPI 519
E KKA+LV+IA DVDPI
Sbjct: 144 EAKKAKLVLIASDVDPI 160
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 433 IRSGTNTVTKLVEKKKAQLVVIAHDVDPI 519
+R G N TK + + ++ +V+A D +PI
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPI 60
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +3
Query: 147 YWSGHSANS*LVQICKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTGQDYS 302
Y+ + N + Q+ A YP+ + SAS S+P+ P T + S
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 226 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 327
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 3.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 454 LCLCRIGWC 428
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 210 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 299
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 408 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 238
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +1
Query: 298 TAKGLFKILEKYR 336
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 327 LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSL 226
L+N ++ L +L + L +V++ H TTL Y+L
Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTL 1723
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 435 PIRHKHSHQAGREEEGAACGHR 500
P HKH++ +EE +C HR
Sbjct: 151 PNGHKHTYAEMTDEERNSCSHR 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,718,515
Number of Sequences: 5004
Number of extensions: 30924
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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