Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306B02f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 159 1e-39
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 62 4e-10
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_57776| Best HMM Match : EB (HMM E-Value=2.9) 29 3.1
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 4.1
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 159 bits (387), Expect = 1e-39
Identities = 76/136 (55%), Positives = 91/136 (66%)
Frame = +1
Query: 112 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 291
NPL EKRP+NF IG IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD
Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88
Query: 292 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 471
+ + LFK+L KYRPET +P ++ G N +T LVE
Sbjct: 89 RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148
Query: 472 KKKAQLVVIAHDVDPI 519
KKAQLVVIAHDVDPI
Sbjct: 149 NKKAQLVVIAHDVDPI 164
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 61.7 bits (143), Expect = 4e-10
Identities = 32/70 (45%), Positives = 37/70 (52%)
Frame = +1
Query: 310 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQL 489
LFK+L KYRPET +P ++ G N +T LVE KKAQL
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63
Query: 490 VVIAHDVDPI 519
VVIAHDVDPI
Sbjct: 64 VVIAHDVDPI 73
>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 105 DRESSLREEAKELCYWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 275
DR ++ E KE+CYW GH + + + + + + T+++SE S +P+
Sbjct: 137 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASTSEGGASAKPV 193
>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
Length = 669
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 105 DRESSLREEAKELCYWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 275
DR ++ E KE+CYW GH + + + + + + T++ SE S +P+
Sbjct: 187 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASKSEGGASAKPV 243
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 423 PLWWRLIFLGNLSFSSFPQPLFPG 352
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 234 TSASSESAPSDQPIYPDTG 290
T+ASSE+APS P PD G
Sbjct: 43 TAASSEAAPSSAPSMPDYG 61
>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 832
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 181 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 330
SR RW Y R+ KA+LQR ++ I Q T + K +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 228 GCTSASSESAPSDQPIYPDTGQDYS 302
GC ++ PS+ P YP T + YS
Sbjct: 1229 GCRPSNDRVKPSEMPHYPKTTEKYS 1253
>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1792
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 408 ASTKEAQHHPIRHKHSHQAGREEEGAACGHRS 503
A + +H +HKH H+ G+ + HRS
Sbjct: 475 AKKESRKHKKHKHKHEHKEGQHKGSHRSSHRS 506
>SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -3
Query: 330 FLQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSL 226
F+QNL L CS ++ G+LV+++ QTTL +L
Sbjct: 28 FIQNLSLFL-CSFLKEHGQLVEKKVDLQTTLLEAL 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,310,326
Number of Sequences: 59808
Number of extensions: 243783
Number of successful extensions: 763
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -